Protein

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Genbank accession
ARB15014.1 [GenBank]
Protein name
gene transfer agent host specificity protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MAAAIALPIVSAIVSTAISYAFPSDGPRLRDTKVSASTYGNVIPEIYGTARVGGNMIWSKPFTEKKKKKRAGKGGSYYNEYTYYCDFAMAFCRGPVKEVRRIWADGKVIYDTTGGSEVIDNNKYRFRFYPGDEAQLPDSLIVEDKGADYAPAYRGLCYVVFDDFALADFGNRIPQIMAEVYAGDEGGAAITDIVPLPSSPVTGGSYQLGQMMIDADRGYFYLVDPVSNPAGTVLRRFLLANGKEDRREIVSIPQAQFPPSVYDSPELTSVRGVTSKGELLCVFGGVNNYMRIEKLDPYSWQSLGTIGRSYPFEGTPENSLEHSNTNFEISRDEKGNYLCLTLGVFGEYNIFDPSDMSFKAKGDMAGWNGPATPMYICARQGGPATSRRFYHVTYAGGASLQVCSLGEVLYNHPVEFPGNSQTATAWAFWDEGDPGVVFFYSDGPNRYIAKWSESTGVLAWKTQLRNSDPFCGYGVYGLRARIKDNEFHWVYNKHLFSINTATGQWIDRTFDQDFYKSDNDKTAEQVNDGDKGLLLPRDISEDYVIYDPRRNIVICVGQIQGQNGIVHVGGYTGGKTSVGAIVERLLVSTGQMTSNDYDLTPLYDIPVYGYGYASSTDIKSIIAELRNLFMFDLVESDGRLVARVRGDQDPDAEVPWKLLGSQSGPTPDKADYWKETRMSESDLPASIDLTYSNIDDDYNPSTAKSKRIASPVATMLSRQQVKAECNLVMDATEAKNRVNIMLYTQWEERTQHQTALPWLYANLDASDLISVTMEDGRNYFERIGSIEFGADFSSRLETYGTDSGAYLSDKTGDGGGAGRPTVVPAPKPVVGFILNTPLLRDTHDSGGNFSNWYSAIGAGAPGVFLGGTMFKSANAQDYVDLYQEPESAEWGTVMGAVPSPSHGWFALDWETRITITPAVDFFELESITDDELWEGLNLVVIGDEVLQFRDAVQNADGTWTIWNLLRGRRGTQYACDNHKAGERFVFLDERSIEFQAENLDTSGQNRWYKAVGSGMSLFETDPIQINYQPRDLMPYRPADIRRAVAGGDVTVTWKRRTRFTATLKDGTGVVSLNEGAEAYEAYVLAAPYSGDLSRQDAPTAYRRKYTLTSPSFTYTAAEQTADGFDVNLDTLHVVIYQLSSVVGRGFPGARSIESWQDF
Physico‐chemical
properties
protein length:1158 AA
molecular weight: 128326,61150 Da
isoelectric point:4,82344
aromaticity:0,11917
hydropathy:-0,36943

Domains

Domains [InterPro]
DC_1879
ATT
1–248
DC_1879 IPR007110 DC_1657 IPR056490
IPR032876
ATT
615–787
IPR032876
DC_1311
RBD
784–1157
DC_1311
ARB15014.1
1 1158
Architecture
ATT
STR
STR
ATT
STR
RBD
ATT 1-248 | STR 259-339 | STR 557-614 | ATT 615-787 | STR 788-813 | RBD 814-1157 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
ARB15014.1
1 1158
Domain Start End Length (AA) Confidence
N-terminal 1 197 197 0,8492
Central domain 198 577 381 0,8385
C-terminal 578 1158 580 0,1142
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-197
Central
198-577
C-terminal
578-1158

Taxonomy

  Name Taxonomy ID Lineage
Phage Caulobacter phage Ccr32
[NCBI] 		1959738 Uroviricota > Caudoviricetes > Jeanschmidtviridae > Shapirovirus cbk >
Host Caulobacter crescentus NA1000
[NCBI] 		565050 Pseudomonadota > Alphaproteobacteria > Caulobacterales > Caulobacteraceae > Caulobacter > Caulobacter vibrioides

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ARB15014.1 [NCBI]
Genbank nucleotide accession
KY555146 [NCBI]
CDS location
range 68478 -> 71954
strand +
CDS
ATGGCCGCCGCCATTGCCCTTCCGATCGTCTCCGCCATTGTCAGCACGGCGATCAGCTACGCCTTCCCGAGCGACGGCCCGCGCCTGCGCGACACCAAGGTCTCGGCCTCGACCTACGGCAATGTGATCCCGGAAATCTACGGGACCGCCCGCGTCGGCGGCAACATGATCTGGTCCAAGCCGTTCACCGAGAAGAAGAAGAAGAAGCGGGCCGGCAAGGGCGGCTCCTACTACAATGAGTACACCTACTACTGCGACTTCGCCATGGCGTTCTGCCGGGGTCCGGTCAAGGAAGTGCGCCGCATCTGGGCCGACGGCAAGGTGATCTACGACACCACCGGCGGCTCGGAGGTGATCGACAACAACAAGTACCGCTTCCGCTTCTATCCCGGCGACGAGGCGCAGCTTCCCGACAGCCTCATCGTCGAGGACAAGGGCGCCGACTACGCCCCCGCCTACCGGGGTCTCTGCTATGTCGTGTTCGACGACTTCGCCCTGGCCGATTTCGGCAACCGCATCCCGCAGATCATGGCCGAAGTCTACGCTGGAGACGAAGGCGGCGCGGCGATCACCGACATCGTCCCGCTGCCCAGTTCTCCGGTCACCGGCGGCTCCTACCAGCTTGGCCAGATGATGATCGACGCCGACCGGGGCTACTTCTACCTCGTCGATCCGGTGTCCAACCCGGCGGGCACCGTCCTGCGCCGCTTCCTGCTGGCGAACGGCAAGGAAGACCGTCGCGAGATCGTCTCGATCCCGCAGGCCCAGTTCCCGCCCTCCGTCTATGACAGCCCTGAGCTAACCTCGGTCCGGGGCGTCACTTCCAAGGGCGAGCTTCTCTGCGTCTTCGGTGGCGTCAACAACTACATGCGGATCGAGAAACTCGATCCCTATTCCTGGCAGTCGCTGGGGACGATCGGCCGCAGTTATCCGTTCGAGGGCACGCCCGAGAACAGCCTGGAGCACTCCAACACCAACTTCGAGATTTCGCGGGACGAGAAAGGGAATTATCTCTGCCTGACGCTGGGGGTGTTTGGCGAGTACAACATCTTCGACCCGAGCGATATGTCGTTCAAGGCCAAGGGCGACATGGCGGGCTGGAACGGACCAGCGACGCCGATGTACATCTGCGCCCGCCAGGGCGGCCCGGCGACCAGCCGCCGGTTCTACCATGTCACCTATGCCGGCGGGGCGTCCTTGCAGGTGTGCAGCCTGGGCGAGGTGCTCTACAACCATCCGGTGGAGTTCCCCGGCAATTCGCAGACCGCCACCGCTTGGGCCTTCTGGGACGAAGGCGATCCGGGCGTGGTCTTCTTCTATTCCGACGGCCCCAATCGCTACATCGCCAAGTGGTCGGAATCCACCGGCGTGCTCGCCTGGAAGACTCAGCTTCGCAACTCCGATCCGTTCTGCGGCTATGGGGTCTATGGTCTGCGCGCCCGGATCAAGGATAACGAGTTCCACTGGGTCTACAACAAGCACCTGTTCTCGATCAACACCGCCACGGGTCAGTGGATCGACCGGACCTTCGACCAGGACTTCTACAAGAGCGACAACGACAAAACCGCCGAACAGGTCAACGACGGCGACAAGGGCCTGCTGTTGCCCCGCGACATCTCCGAGGACTATGTCATCTACGATCCGCGCCGCAACATCGTGATTTGCGTCGGACAGATTCAGGGCCAAAACGGCATCGTCCACGTCGGAGGCTACACGGGGGGCAAGACCTCGGTGGGGGCCATTGTCGAGCGTCTTCTGGTCTCGACGGGGCAGATGACCTCGAACGACTACGACCTGACGCCGCTCTACGACATCCCGGTCTACGGGTACGGCTACGCCTCCTCGACCGACATTAAGTCGATCATCGCCGAACTGCGCAACCTCTTCATGTTCGACCTCGTCGAAAGCGACGGTCGACTGGTCGCGCGCGTGCGCGGCGATCAGGACCCTGACGCCGAGGTGCCCTGGAAGCTCCTGGGCTCCCAGAGCGGCCCGACCCCGGACAAGGCCGACTACTGGAAAGAGACCCGGATGTCGGAGTCCGACCTCCCGGCCTCGATCGACCTGACCTATTCGAACATCGATGACGACTACAATCCGTCAACGGCCAAGTCCAAGCGGATCGCCTCGCCGGTGGCGACCATGCTGTCGCGTCAACAGGTCAAGGCCGAGTGCAACCTCGTCATGGACGCGACCGAGGCCAAGAACCGCGTCAACATCATGCTCTACACCCAGTGGGAGGAACGCACGCAGCACCAGACGGCCCTTCCCTGGCTCTACGCCAATCTCGACGCCTCGGACCTGATCTCGGTGACCATGGAGGACGGCCGCAACTATTTCGAGCGGATCGGTTCGATCGAGTTCGGCGCCGACTTCTCCTCGCGCCTGGAAACCTATGGCACCGACAGCGGTGCCTACCTTTCGGACAAGACCGGCGACGGCGGCGGCGCTGGCCGTCCGACCGTCGTGCCGGCCCCCAAGCCGGTGGTGGGCTTCATCCTCAACACCCCACTGCTGCGCGACACCCACGACAGCGGCGGCAACTTCTCCAACTGGTATAGCGCCATCGGCGCGGGCGCGCCGGGCGTGTTCCTCGGCGGCACGATGTTCAAGTCCGCCAACGCCCAGGACTATGTCGATCTCTACCAGGAGCCGGAGAGCGCCGAGTGGGGCACGGTGATGGGGGCCGTGCCCTCCCCCTCGCACGGCTGGTTCGCGCTCGACTGGGAAACGCGCATCACCATCACGCCGGCGGTCGACTTCTTCGAACTGGAGTCGATCACCGACGACGAGCTTTGGGAAGGGCTCAATCTCGTGGTGATCGGCGACGAGGTCCTCCAGTTCCGCGACGCGGTCCAGAACGCCGACGGCACCTGGACGATCTGGAACCTGCTGCGCGGCCGGCGCGGGACGCAGTATGCCTGCGACAATCACAAGGCCGGCGAGCGGTTCGTGTTCCTCGACGAGCGCTCGATCGAGTTCCAGGCCGAGAACCTCGACACCTCGGGCCAGAACCGCTGGTATAAGGCCGTCGGCTCGGGCATGTCGCTGTTCGAGACCGATCCGATCCAGATCAACTACCAGCCCCGCGACCTCATGCCCTACCGCCCGGCCGACATCCGTCGGGCGGTCGCGGGCGGAGACGTCACCGTGACCTGGAAGCGCCGCACGCGCTTCACGGCCACGCTGAAGGACGGCACCGGCGTGGTCAGCCTCAACGAAGGCGCCGAAGCTTACGAGGCCTATGTGCTCGCCGCACCGTACTCGGGCGACCTGTCGCGTCAAGACGCGCCGACCGCCTACCGTCGCAAATACACCCTGACGAGCCCAAGCTTCACCTACACGGCGGCCGAGCAGACGGCTGATGGATTTGACGTGAATCTTGACACTCTGCACGTGGTGATCTATCAGTTGAGTTCGGTTGTTGGTCGGGGTTTCCCCGGCGCGCGCTCGATTGAGTCCTGGCAGGACTTCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
07ca68c0cdba665c14c6e69716d6aa890bf8e43852b0c1b89dd576a2ce473d0f
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7426
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50