Protein

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Genbank accession
YP_009622937.1 [GenBank]
Protein name
virion structural protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MALERHEVKNPVGLNTDLAPADLPESQWSGGNNIRFKNGKAQKALGYQSIFSTTTDPVLTLFPYIKSNIPYWLLGTKDKILAADGTTVLDVSGGNTFHASEESNWIGSSLNGAIIMNNPVDGPYAMTPDLGYFVKLPNFPANTQAAVIRPYKNYLIALNITKNSVEMPQLVKWSSPADPGGVPGTWDETDPKNDAGENPLADTNGKIVDGKKLRDAFIIYKEDSVYSMRYIGGVYVFQFQQLFDDVGMLGPNCAVEFDGKHFVVGQGDVYVHNGVQKSSVIDGKMRKFFFNDINSENYRKTFVVADTVNTEMWVCYSSTKQAEGAFCDRALIWNWSEDTWSIRDMPNVIGGAYGIIDPKESNLWDDDNQIWDVDTTVWGAGSYNPAKSKLMFTSFADRKIYLFGETATFDGQPFTSYLERTDMYLGEDRLIKTMSSLIPHASGNGKINVWVGSSQVQGGPIRWTGPIPYNIGWEYKVDCKHVGRYVAVRFEFESFGDWYFNGYTAEYAPNAGMR
Physico‐chemical
properties
protein length:514 AA
molecular weight: 57371,74830 Da
isoelectric point:5,00703
aromaticity:0,13035
hydropathy:-0,35798

Domains

Domains [InterPro]
DC_0191
STR
7–514
DC_0191
YP_009622937.1
1 514
Architecture
STR
STR 7-514
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009622937.1
1 514
Domain Start End Length (AA) Confidence
N-terminal 1 372 372 0,6924
Central domain 373 503 132 0,1550
C-terminal 504 514 10 0,9924
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-372
Central
373-503
C-terminal
504-514

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage NV1
[NCBI] 		2079543 Uroviricota > Caudoviricetes > Vicosavirus >
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009622937.1 [NCBI]
Genbank nucleotide accession
NC_042107 [NCBI]
CDS location
range 34147 -> 35691
strand -
CDS
ATGGCCCTTGAAAGACATGAGGTGAAGAACCCGGTTGGTCTGAACACGGATCTAGCACCTGCTGACCTCCCCGAATCTCAATGGTCGGGTGGTAACAACATCCGCTTCAAGAACGGGAAGGCTCAGAAAGCTCTGGGCTATCAATCGATTTTCTCGACTACCACAGATCCAGTACTGACCCTGTTCCCTTATATCAAGTCGAACATTCCGTACTGGCTCTTGGGTACGAAGGATAAGATTCTCGCAGCTGATGGTACTACTGTCCTCGACGTATCTGGTGGCAACACCTTCCATGCGAGCGAGGAGAGCAACTGGATTGGTAGTTCCCTGAATGGGGCTATCATCATGAACAACCCAGTGGATGGACCATATGCGATGACCCCAGACCTTGGGTACTTCGTGAAGCTTCCAAACTTCCCAGCCAACACTCAGGCTGCTGTGATCCGTCCATATAAGAACTACCTGATTGCTCTGAACATCACCAAGAATTCTGTGGAAATGCCCCAGCTTGTCAAGTGGAGTTCCCCAGCTGATCCCGGTGGTGTCCCGGGTACATGGGATGAGACAGACCCTAAGAATGATGCTGGTGAGAATCCACTGGCTGATACCAACGGCAAGATCGTCGATGGTAAGAAACTTCGGGATGCCTTCATCATCTACAAAGAAGACTCTGTGTACTCCATGCGATATATCGGGGGTGTGTATGTCTTCCAGTTCCAGCAATTGTTTGATGACGTTGGTATGCTTGGCCCCAATTGTGCTGTTGAGTTTGATGGTAAGCACTTCGTCGTAGGTCAAGGTGATGTGTACGTTCACAACGGTGTCCAGAAGAGTTCGGTGATCGATGGGAAGATGCGTAAGTTCTTCTTCAACGATATCAACTCCGAGAACTACCGTAAGACCTTCGTGGTGGCAGATACAGTCAACACTGAGATGTGGGTATGCTATTCCTCGACTAAACAAGCCGAGGGTGCCTTCTGTGACCGAGCCCTTATCTGGAACTGGTCGGAAGACACTTGGTCAATCCGAGATATGCCTAACGTGATCGGTGGTGCCTACGGTATCATTGACCCGAAAGAGTCTAACCTCTGGGATGATGACAACCAGATCTGGGATGTGGATACTACAGTGTGGGGTGCAGGTTCTTATAACCCAGCCAAATCCAAACTGATGTTCACCTCCTTCGCAGACCGCAAGATCTACCTCTTTGGTGAGACTGCGACCTTCGATGGGCAACCCTTTACGTCCTACCTTGAGCGTACCGACATGTACCTTGGGGAAGACCGGTTGATCAAAACAATGTCCTCTCTTATCCCACATGCGTCGGGTAACGGGAAGATCAACGTTTGGGTCGGGTCCTCTCAGGTCCAAGGTGGTCCTATCCGATGGACGGGTCCCATCCCATACAACATCGGTTGGGAATACAAGGTTGACTGTAAGCACGTCGGACGGTATGTCGCTGTCCGGTTTGAGTTTGAATCCTTTGGTGACTGGTACTTTAACGGGTACACAGCCGAATACGCACCTAATGCGGGTATGAGATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
c4a7daf1378aad819b05601b64532c80514759ec0ac5fb39338f7c87efeb28b7
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,9102
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genome of Pseudomonas phage NV1, a LUZ24-like virus of Pseudomonas tolaasii Storey,N.H. 1994 — GenBank