Protein

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Genbank accession
YP_009610327.1 [GenBank]
Protein name
tail protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MILEGVYPSFLKGVSQQTPQERSDGQLGAQLNLLSDAVTGLRRRGGVRFQTKLAGIPNSSYIRLIDINGVNYIMIVDTVTGTLKIYNFDGSLLKAHQTDYLKASNGKASIRSTVSRNNCFVLNTEQVITKTPTGGTNPTPNPSTMGYISIRSGQFSKMYSVDIKSGSYTLSFGVGTSGSEAWQATPEWVATEMEQKIKEDPTLNARYDVVREGSTVALKAKSITDTNLLVIESGTGSTYIQTSNSSRVQGKQDIIANLPNILDKYIIAVGTVGNSAYYQYNATSSTWKECGIYEAPYKFTNEPIYWYFDDTDTIQVKSLDIQPRAAGDDDNNPLPKFVDFGITGISAYQSRLVLLSGSYVNMSATADFNVYMRTTVEELQDDDPIEVSSTALSAAQFEYAVPYNKDLVLLAQNQQAVIPANSTVLTPKTAVIYPSSKANISMASEPQVVSRSLYYTYQRGTDYYQVGEMIPNAYADAQYYAQNLADHIPLYATGVCTSITGSTTDNMAVFSSDQKELLVHQYLWAGEDRPLMSFHKWELPYDVLHVQFLQEYLVIFMDVGDDLVVGTINVQLNQLDNKPIPFLDIYQYVDIVDGEGTLPEFLPEGELVAAVYSSETMRHAMVQYEIEGTKIKCQFNGRIYLGVPYESSLTLTPPFVKDDKGRVVAGSNSTVVDLTMTFKGTGEFEYHVSDAYGDVFDGETSAQAWSEAQLGYTRVNTVSDIKFPCGTLLSSTEFSVRTTGTTELNIISTSYNIRIPNRGRRRL
Physico‐chemical
properties
protein length:763 AA
molecular weight: 84372,66670 Da
isoelectric point:4,83043
aromaticity:0,10223
hydropathy:-0,23801

Domains

Domains [InterPro]
DC_0058
STR
1–763
DC_0058
IPR058003
TTP
7–760
IPR058003
YP_009610327.1
1 763
Architecture
STR
STR 1-763
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009610327.1
1 763
Domain Start End Length (AA) Confidence
N-terminal 1 137 137 0,9797
Central domain 138 339 203 0,1220
C-terminal 340 763 423 0,1951
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-137
Central
138-339
C-terminal
340-763

Taxonomy

  Name Taxonomy ID Lineage
Phage Acinetobacter phage vB_AbaP_B1
[NCBI] 		2016049 Uroviricota > Caudoviricetes > Autographivirales > Beijerinckvirinae > Friunavirus
Host Acinetobacter baumannii
[NCBI] 		470 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Moraxellales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009610327.1 [NCBI]
Genbank nucleotide accession
NC_042003 [NCBI]
CDS location
range 25735 -> 28026
strand +
CDS
ATGATTCTTGAGGGAGTGTACCCGTCATTCTTGAAAGGTGTATCACAGCAAACACCTCAAGAGCGTAGTGACGGACAATTAGGCGCACAGCTTAATTTATTATCTGATGCTGTAACAGGTTTACGTAGACGTGGTGGGGTTAGATTCCAAACCAAGTTAGCAGGTATTCCTAATAGTAGTTATATACGTTTAATTGACATCAACGGTGTTAATTATATTATGATCGTAGATACTGTTACAGGTACTTTAAAGATTTATAATTTTGATGGTTCCTTACTTAAAGCACATCAAACAGATTATCTTAAGGCTTCCAATGGTAAGGCTAGTATCCGTAGTACAGTCTCACGTAATAATTGCTTTGTATTAAATACAGAACAAGTTATTACTAAGACACCTACAGGTGGTACTAACCCAACACCTAATCCAAGTACAATGGGTTATATCAGTATTCGTTCTGGTCAGTTCTCTAAGATGTATTCGGTAGACATCAAGTCAGGTTCTTATACCTTGAGCTTTGGTGTAGGTACGTCTGGTAGTGAGGCATGGCAGGCTACTCCTGAATGGGTAGCTACGGAAATGGAACAGAAGATTAAAGAAGACCCTACCCTTAACGCACGTTATGATGTTGTAAGAGAGGGTAGTACAGTTGCACTTAAAGCTAAGTCTATTACTGATACAAACTTGCTAGTGATTGAGTCTGGTACAGGTAGTACTTATATTCAGACGAGTAATTCTAGTCGTGTACAAGGTAAGCAAGACATTATTGCTAACCTACCTAATATCCTAGATAAGTATATTATTGCAGTGGGTACAGTAGGTAACTCAGCTTATTACCAATACAACGCTACTTCGAGTACTTGGAAAGAATGCGGTATCTATGAAGCACCTTATAAGTTCACTAACGAACCTATTTACTGGTACTTTGATGATACAGACACTATTCAAGTTAAAAGCCTAGATATTCAGCCACGTGCAGCAGGCGATGATGATAATAACCCATTACCGAAGTTTGTGGATTTCGGTATTACTGGTATTAGTGCTTACCAATCACGCTTAGTACTCCTCAGTGGCTCATATGTCAATATGAGTGCTACAGCAGACTTTAATGTCTATATGCGTACCACTGTAGAGGAATTACAAGATGATGATCCTATTGAAGTGTCTAGTACTGCTTTGAGCGCTGCACAGTTTGAATATGCTGTTCCGTATAATAAAGATTTAGTTTTATTAGCTCAGAACCAACAAGCTGTTATTCCAGCCAACAGTACTGTACTTACACCTAAGACGGCTGTTATCTACCCGAGTTCAAAAGCTAACATTAGTATGGCTAGTGAACCACAGGTTGTATCTCGTAGTTTGTATTATACATATCAACGTGGCACAGATTATTACCAAGTTGGTGAGATGATTCCTAATGCTTATGCAGATGCTCAGTACTATGCACAGAACTTAGCAGACCATATTCCGCTATATGCTACAGGTGTTTGTACTTCAATCACAGGTAGTACTACGGATAATATGGCAGTGTTCAGTTCAGATCAGAAAGAATTACTTGTACATCAATATCTATGGGCAGGTGAAGACCGTCCGTTAATGAGCTTCCATAAATGGGAGTTACCTTACGATGTGCTTCATGTACAATTTCTACAAGAATATTTAGTAATATTTATGGATGTTGGTGATGATTTAGTGGTTGGTACTATTAACGTACAGTTAAACCAACTAGACAATAAGCCTATCCCATTCTTGGACATTTACCAGTACGTAGATATTGTAGATGGTGAGGGTACATTACCTGAGTTCTTACCAGAGGGTGAATTAGTAGCTGCTGTATATAGTTCTGAGACTATGCGACATGCTATGGTTCAGTATGAAATTGAAGGTACTAAGATTAAGTGTCAATTCAATGGACGTATTTATCTAGGTGTACCTTATGAAAGTTCACTCACACTAACACCTCCTTTTGTTAAAGATGATAAAGGTCGAGTAGTTGCGGGTAGTAATAGCACAGTAGTCGATCTTACAATGACATTCAAGGGTACAGGTGAGTTTGAGTACCATGTTTCTGATGCCTATGGTGATGTGTTTGATGGTGAAACATCCGCACAGGCTTGGTCAGAAGCACAACTAGGGTATACGCGAGTAAATACAGTTAGTGATATTAAATTTCCGTGTGGTACATTATTAAGTTCGACAGAGTTTAGTGTTAGAACTACTGGTACAACTGAGTTAAACATCATTAGTACTAGTTATAATATCCGTATACCAAACAGAGGACGGAGACGTTTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
8f9990bef4ecea8652c50e3bb43ed140239dfe8b253b5456e7d1e0159a07c77f
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8654
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Sensitivity acquisition of phages to Acinetobacter calcoaceticus-baumannii complex species through exchange of pectate lyase domains Oliveira,H., Rita,A., Konstantinidis,N., Dotsch,A., Ferreira,A., Akturk,E., Nemec,A., Sillankorva,S., Shneider,M. and Azeredo,J. 2021-06 — GenBank