Protein

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Genbank accession
AUE23214.1 [GenBank]
Protein name
tail tubular protein B
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,63
Protein sequence
MGLVSQSVKNLKGGISQQPDILRFSNQGALQINGWSSETQGLQKRPPTTFTKRLQNKGFLGTKPLVHLINRDAKEQYFVGFSGTGLAVWDLKGNNYTVRGYNGYANCANPRTDLRLITVADYTFVVNRNTVCKMGSTMTNADYHRLDGRAIINVRGGQYGRTLSITINGDGTGSSPQASIKMPNGSAEKVPAGEPYAGMNQVDMTDASWIAAELARQLTATLGPSGWSFQAGTGWILITAPAGDNVRQIATKDGYADTLLSGFIYQVQTFTKLPANAPPGYLVEITGESARSGDNYWVQYDASGKVWKETAKPKIIAGFNNATLPHALVRAADGQFDWTPLTWDGRNAGDDDTNPMPSFVGAAINDVFFFRNRLGFLSGENVVMSRTSKYFNFFPSSVATLSDDDPIDVAISHNRISILKYAVPFSEQLLLWSDQAQFVLSSNGILSSKTIELDLTTEFDVSDGARPYGIGRGVYFAAPRASFTSLKRYYAIQDVSDVKSAEDVSAHVPSYITNTVHAIHGSGTENFVSILSDGSPNKVFIYKFLYLDEILQQQSFSHWEFGDAATTRVLAASCIGSYCYLMIDRPEGLCLERMEFTQHTIDYSIEPYRTYMDMKKTIVLGAYNIDTNLTSFDVRTAYGGTPGPESTFYTIDQQGVLIEHEARDWATNPYISFVGNRAGEQMVIGKQYIFQYEFSKFLIKQTADDGSTSTEDIGRLQLRRAWLNYEESGAFEINVNNGSSEFVYVMTGGRLGIQRVLGELSVGTGQFKFPVTGNAVNQRVTITSSNPNPLNVIGCGWEGNYIRRSSGI
Physico‐chemical
properties
protein length:808 AA
molecular weight: 88898,60860 Da
isoelectric point:5,81261
aromaticity:0,11139
hydropathy:-0,26411

Domains

Domains [InterPro]
IPR058003
TTP
1–808
IPR058003
AUE23214.1
1 808
Architecture
TTP
TTP 1-808
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AUE23214.1
1 808
Domain Start End Length (AA) Confidence
N-terminal 1 140 140 0,9923
Central domain 141 339 200 0,3371
C-terminal 340 808 468 0,1957
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-140
Central
141-339
C-terminal
340-808

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage Pf1 ERZ-2017
[NCBI] 		2761363 Uroviricota > Caudoviricetes > Autographivirales > Studiervirinae > Ghunavirus
Host Pseudomonas fluorescens
[NCBI] 		294 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pseudomonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AUE23214.1 [NCBI]
Genbank nucleotide accession
MG250485 [NCBI]
CDS location
range 23661 -> 26087
strand +
CDS
ATGGGACTCGTTTCGCAATCCGTCAAGAACCTCAAAGGAGGTATCTCGCAACAACCAGACATCCTTCGGTTCTCCAACCAAGGTGCTCTGCAAATCAACGGGTGGTCATCGGAGACTCAGGGTCTTCAGAAGCGGCCACCAACCACCTTCACCAAGCGGCTCCAGAACAAGGGTTTTCTCGGCACCAAGCCGCTGGTACACCTCATCAACCGGGACGCCAAAGAGCAATACTTCGTGGGCTTCTCTGGGACCGGTCTGGCAGTCTGGGACCTGAAGGGAAACAACTACACCGTGCGTGGCTACAACGGTTACGCCAACTGCGCCAACCCTCGCACCGACCTGCGCCTCATCACCGTGGCCGACTACACCTTCGTGGTAAACCGGAACACCGTGTGCAAGATGGGATCGACCATGACCAATGCGGACTACCATCGTCTGGACGGTCGAGCGATCATCAACGTCCGTGGTGGTCAGTATGGCCGAACCCTGTCGATCACCATCAACGGTGACGGCACTGGGTCCAGTCCTCAAGCGTCCATTAAGATGCCCAACGGTTCTGCCGAGAAGGTGCCTGCTGGTGAACCCTATGCGGGCATGAACCAAGTGGACATGACAGATGCCTCATGGATCGCCGCTGAGCTGGCCCGACAACTGACAGCCACTCTTGGTCCTTCTGGGTGGTCGTTCCAAGCGGGCACCGGGTGGATTCTCATCACGGCACCAGCAGGGGATAACGTGCGTCAGATCGCAACCAAGGACGGCTACGCTGACACCCTGCTCAGTGGGTTCATATATCAGGTCCAGACCTTCACGAAGCTCCCTGCGAACGCCCCACCGGGTTACCTCGTGGAGATCACTGGTGAGTCTGCCCGTTCGGGTGACAACTACTGGGTCCAATATGACGCCTCTGGGAAGGTCTGGAAGGAGACAGCGAAGCCCAAGATCATCGCAGGGTTCAACAACGCAACGCTCCCACACGCGCTCGTGAGGGCCGCTGACGGGCAGTTCGACTGGACTCCCCTGACGTGGGATGGACGCAACGCTGGTGACGATGACACGAACCCAATGCCGTCCTTCGTGGGCGCTGCGATCAACGACGTGTTCTTCTTCAGGAACCGTTTGGGTTTCCTCTCTGGTGAGAACGTCGTGATGTCTCGGACCTCGAAGTATTTCAACTTCTTCCCGAGCAGCGTGGCGACCCTGAGCGATGACGACCCAATCGACGTGGCTATCTCGCACAACCGCATCTCGATCCTGAAGTACGCTGTACCTTTCTCCGAGCAGCTCCTGCTGTGGTCCGACCAAGCTCAGTTCGTTCTGTCGAGCAACGGTATCCTGTCGAGCAAGACCATCGAGCTGGACCTGACCACTGAGTTCGACGTGAGCGATGGTGCCCGTCCCTATGGGATTGGTCGCGGGGTTTACTTCGCAGCTCCACGGGCCTCCTTCACGTCCCTCAAACGGTACTACGCGATTCAGGATGTCTCTGACGTGAAGTCCGCTGAGGATGTCTCTGCGCACGTTCCGAGCTACATAACGAACACCGTCCACGCGATCCACGGGTCTGGTACTGAGAACTTTGTGAGCATCCTTTCGGACGGCTCGCCAAACAAGGTCTTCATCTACAAGTTCCTGTACCTCGACGAGATTCTCCAGCAGCAGTCCTTCAGTCACTGGGAGTTCGGTGATGCGGCCACAACCCGTGTCCTCGCAGCCTCGTGCATTGGCTCCTACTGCTACCTGATGATCGACCGACCAGAGGGACTGTGCCTTGAGCGTATGGAGTTCACGCAACACACCATCGACTATTCCATCGAGCCTTACCGGACCTACATGGACATGAAGAAGACCATCGTCCTCGGTGCCTACAACATCGACACGAACCTGACTTCGTTCGACGTTCGGACTGCCTACGGTGGAACGCCGGGTCCTGAGTCCACGTTCTACACCATCGACCAGCAAGGGGTTCTCATCGAACACGAGGCGCGGGACTGGGCGACCAATCCGTACATCTCGTTCGTGGGCAACCGGGCTGGCGAGCAGATGGTGATCGGAAAGCAGTACATCTTCCAGTACGAGTTCAGCAAGTTCCTCATCAAGCAGACCGCTGACGATGGGTCCACCTCGACCGAGGACATTGGACGCTTGCAGCTTCGCCGTGCGTGGCTGAACTACGAGGAATCTGGTGCCTTCGAGATCAACGTCAACAACGGCTCCAGCGAGTTCGTCTACGTGATGACTGGTGGTCGCCTCGGGATTCAACGAGTCCTCGGTGAGTTGTCAGTGGGTACTGGTCAGTTCAAGTTCCCTGTGACCGGCAATGCCGTCAACCAACGAGTCACCATCACCAGCTCCAACCCGAACCCACTCAACGTGATCGGATGCGGCTGGGAGGGTAACTACATCCGCCGTTCTTCCGGCATCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
8f285804c62eb30ac01edc2bf7f1d9bdb3b84d8a1e60f03b4138c6d87be010f2
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8920
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Antibacterial composition for extension of chilled fish shelf life and decreasing of risk of food-borne infections, bacteriophage strains for its preparation Zulkarneev,E.R., Aleshkin,A.V., Rubalsky,O.V., Kiseleva,I.A., Rubalskii,E.O. and Lebedev,S.N. 2019-10 — GenBank