Protein

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Genbank accession
AEA72928.1 [GenBank]
Protein name
putative tail fiber protein
RBP type
TSP
Evidence RBPdetect
Probability 0,88
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MIQKVISGSKGGSPKPHKPVEMEDNLISINKIKILLAVSDGEIDETFSLKQLMFNSVPVQNEDGSFNFEGVKAEFRPGTQTQEYIKGMEDSSSEVTVNREVTTDNPYTISVTNKTLSAIRIKMFMPRGVRIESNGDKNGVRVEYEVQQAVDGGSFETVLTDVIEGKTMSGYDRSRRVNLPNFNNQVIFRVVRKTPDSKDSNVVDAIQVKSYAEVIDAKFRYPLTGLLFVEFDSKMFPNQLPTISIRKRWKIVNVPSNYDPESRTYNGNWDGTFKKAWTNNPAWVLYDLMINQRYGLDQKELGISVDKWALYEAAQYCDQMVPDGKGGTEPRYLCDVIIQSQTDAYKVIRDICSIFRGMSFWNGESISVIIDRPREPAYIFTNDNVVNGDFSYTFASEKSMYTTCNVMFDDEQNMYQQDVEPVFDREATLRFGNNVTSITAIGCTRRSEANRRGRWILKTNLRSTTVNFATGLEGMIPTIGDVVAIADNFWSSNLTMNLSGRLLEVSGSQIFLPFRVDARAGDFIIVNKPDGNPVKRTISSVSADGKTIEVNIGFGFPVKPNTVFAIDRTDIALQQYVVTKIDKGDDDEEFTYKITAVEYDPNKYDEIDYGVNIDDRPTSIVEPDQIPKPENVQVSSESRIVQGMSVETMIVSWDKVPYAVFYDVQWRKDNGNWQNVPQTANKEVYVEGIYAGNYQVRVRSVAGSGTTSGWSNIVAATLTGKQGEPGRPINLTATDDVVFGIRTKWGFSDGSGDTAYTELQQSPDGTVDNASLLSLIPYPQHEYYHSPMPGGNIVWYRVRTVDRIGNVSQWTDFVRGMASTNVDDIIGEISVDIENSPGYEWLVDNATDNAAQNAANAEAAIENALANDKDAIYMKKENGKRKAEYTKSLKLIADETQARVTSIEQLKASFDDQISASNSELREVIATETGALSREIDQLKAEIGDDIQASLTDIREAIANETEARTQADLSLSARLGNNEAALSQKLDSWSNADSTGAMYGVKLGLKYNGQEYSAGMAMSLIGSGAAVKAQILFEASRFAIMTGMNGQTQYPFVVENGQVILSSAIIKDGFITNAMIGNAIQSNNWDGNQGWHINKNGAAYFMNATVRGALYANNGAFAFNGTNNTVQINNNGITVNLPNGGRVVVGVW
Physico‐chemical
properties
protein length:1149 AA
molecular weight: 127298,85320 Da
isoelectric point:4,84072
aromaticity:0,09138
hydropathy:-0,38451

Domains

Domains [InterPro]
DC_0014
STR
1–1149
DC_0014
IPR053171
Unmapped
3–862
IPR053171 IPR015406
IPR055385
ATT
92–217
IPR055385 IPR032876 IPR036116 Coil
IPR013783
STR
627–720
IPR013783
IPR003961
STR
628–722
IPR003961
AEA72928.1
1 1149
Architecture
STR
ATT
STR
ATT
STR
STR 1-91 | ATT 92-217 | STR 218-339 | ATT 340-488 | STR 489-1149
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AEA72928.1
1 1149
Domain Start End Length (AA) Confidence
N-terminal 1 505 505 0,8900
Central domain 506 1084 580 0,0630
C-terminal 1085 1149 64 0,6497
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-505
Central
506-1084
C-terminal
1085-1149

Taxonomy

  Name Taxonomy ID Lineage
Phage Shigella phage Shfl1
[NCBI] 		2919551 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Shigella flexneri
[NCBI] 		623 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AEA72928.1 [NCBI]
Genbank nucleotide accession
HM035024 [NCBI]
CDS location
range 26402 -> 29851
strand +
CDS
ATGATTCAAAAAGTGATAAGCGGATCGAAAGGCGGTTCACCTAAGCCGCATAAGCCAGTTGAGATGGAAGATAATCTAATCTCAATCAACAAAATCAAGATCCTGTTAGCTGTGTCTGATGGCGAGATTGACGAAACATTCAGCCTAAAGCAGTTGATGTTTAACTCAGTCCCGGTGCAAAACGAGGATGGCTCATTTAACTTCGAGGGAGTAAAGGCAGAGTTTAGGCCGGGGACGCAGACTCAGGAATATATCAAGGGGATGGAAGATAGCTCTAGTGAGGTAACTGTAAACCGTGAGGTTACTACAGATAACCCATACACGATCTCAGTAACCAACAAAACACTTTCGGCAATCCGTATCAAAATGTTTATGCCTCGCGGCGTACGAATTGAAAGCAACGGTGATAAAAACGGCGTAAGAGTTGAGTATGAGGTGCAACAAGCTGTTGATGGCGGCTCGTTTGAGACGGTGCTCACCGATGTAATCGAAGGCAAAACAATGTCAGGTTACGATCGAAGCAGACGTGTAAACCTACCTAACTTCAATAATCAGGTGATATTCAGAGTCGTTCGTAAAACTCCAGACTCTAAAGACTCGAACGTTGTTGACGCGATTCAAGTAAAGAGCTATGCCGAGGTGATTGATGCTAAATTCCGTTACCCTCTGACTGGTCTTCTTTTTGTCGAGTTCGATTCGAAGATGTTCCCAAACCAGTTGCCTACGATCTCAATTCGTAAGCGCTGGAAGATTGTAAACGTTCCGTCAAACTATGATCCAGAATCGCGAACTTATAACGGAAATTGGGATGGAACTTTTAAGAAGGCGTGGACGAATAATCCGGCTTGGGTGCTTTATGACCTGATGATTAATCAGCGTTATGGGCTGGATCAGAAAGAGCTTGGAATATCTGTCGATAAATGGGCGCTATATGAGGCGGCGCAATATTGCGATCAGATGGTTCCTGACGGTAAAGGCGGTACGGAGCCTCGCTACCTTTGTGACGTGATAATTCAGTCACAGACTGATGCGTACAAGGTGATTCGAGATATTTGCTCAATCTTCCGTGGCATGAGCTTTTGGAATGGTGAAAGCATTTCGGTAATCATCGACAGGCCGCGTGAACCTGCGTACATCTTCACTAACGACAACGTGGTTAATGGTGACTTCTCCTACACGTTCGCAAGCGAAAAGAGCATGTACACGACGTGTAATGTGATGTTTGATGATGAACAAAACATGTATCAGCAGGACGTTGAGCCAGTATTCGATCGTGAGGCTACTCTACGTTTTGGGAACAACGTAACGAGTATTACAGCGATCGGTTGCACACGTCGAAGCGAGGCCAACCGACGCGGGAGGTGGATTCTGAAAACTAACCTCCGCAGCACTACGGTAAACTTCGCTACCGGACTTGAGGGCATGATCCCGACAATCGGAGATGTTGTAGCAATAGCTGATAACTTCTGGTCAAGTAACTTGACGATGAACCTGTCAGGGCGTTTGCTCGAAGTATCCGGTAGTCAGATTTTCCTGCCGTTCCGCGTTGATGCTCGCGCAGGTGACTTTATTATCGTAAATAAGCCCGATGGTAATCCCGTGAAGCGCACAATCTCAAGTGTTAGTGCGGATGGTAAGACTATAGAGGTTAACATCGGCTTTGGCTTTCCTGTGAAGCCTAACACGGTATTCGCAATCGACCGTACCGACATTGCGTTGCAGCAGTACGTCGTGACCAAAATCGACAAGGGTGATGATGATGAAGAGTTTACCTACAAGATTACTGCGGTTGAGTACGATCCTAACAAGTACGATGAGATTGATTACGGAGTTAACATCGACGACCGACCGACGAGCATCGTTGAGCCAGATCAGATCCCTAAACCGGAAAACGTGCAGGTGTCCTCAGAGTCGAGAATCGTCCAGGGTATGAGCGTAGAAACGATGATTGTTAGCTGGGATAAAGTGCCGTACGCAGTTTTCTATGACGTCCAGTGGCGAAAGGATAACGGCAACTGGCAGAACGTTCCGCAGACGGCAAACAAAGAGGTTTACGTTGAAGGGATTTACGCTGGAAACTATCAGGTTCGCGTTCGATCTGTAGCTGGCTCAGGTACGACTTCAGGATGGTCAAATATCGTAGCTGCGACGCTGACGGGTAAACAAGGTGAGCCGGGACGACCTATTAACCTTACAGCTACGGATGATGTTGTTTTTGGTATCCGTACAAAATGGGGGTTCTCTGATGGTTCTGGAGATACGGCCTATACAGAGTTGCAACAGTCACCGGATGGAACAGTGGATAACGCAAGTTTGCTTTCTTTGATTCCGTACCCGCAGCATGAGTATTATCACTCACCGATGCCTGGAGGGAATATTGTGTGGTATAGGGTAAGGACGGTTGACAGGATCGGTAACGTGTCTCAGTGGACTGATTTTGTCAGAGGTATGGCATCAACAAACGTTGACGATATCATCGGAGAGATTTCTGTCGATATCGAAAACTCGCCGGGTTACGAGTGGCTTGTTGATAACGCAACAGACAACGCGGCGCAGAACGCAGCTAACGCAGAGGCAGCAATAGAAAACGCGCTCGCCAATGACAAAGACGCGATCTACATGAAGAAGGAGAACGGAAAACGAAAAGCTGAGTACACGAAATCACTTAAACTTATTGCTGATGAGACGCAGGCGCGAGTGACGTCGATCGAGCAGTTGAAGGCAAGTTTTGACGATCAGATTAGCGCAAGCAATAGCGAATTGCGTGAAGTTATAGCGACTGAGACTGGAGCGCTATCGCGTGAAATTGACCAACTCAAGGCAGAGATTGGTGATGATATCCAGGCAAGTTTGACTGATATCAGAGAGGCTATAGCAAACGAGACTGAGGCGAGAACGCAAGCTGACTTGTCGTTAAGCGCGAGGCTCGGGAATAATGAGGCGGCACTTTCTCAAAAACTTGATTCGTGGAGTAACGCGGATTCGACTGGTGCAATGTACGGCGTCAAATTGGGTCTTAAATACAACGGGCAGGAATACAGCGCAGGCATGGCTATGTCTCTGATTGGTTCCGGCGCTGCGGTTAAGGCTCAGATTTTATTTGAGGCATCACGATTTGCCATCATGACTGGAATGAATGGTCAGACGCAGTACCCATTCGTTGTTGAGAATGGCCAGGTTATTCTAAGTAGCGCGATCATCAAGGATGGATTTATTACTAACGCCATGATTGGTAACGCGATTCAGTCTAACAATTGGGATGGAAATCAAGGGTGGCATATTAACAAGAATGGCGCAGCTTACTTCATGAACGCAACCGTAAGAGGTGCTTTGTATGCAAATAACGGAGCCTTTGCATTCAACGGGACAAACAATACGGTTCAGATAAACAATAACGGGATCACGGTTAACCTACCTAACGGTGGACGAGTGGTTGTTGGTGTATGGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
58e1ec31cf9fb3a996c20a0bacd1d6008f53815dca8f49557ed9f57a2111d7e9
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2952
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Therapeutic potential of Shigella phages isolated from Brazil Gregoracci,G.B., Carazzolle,M.F., Brocchi,M. and Mieczkowski,P.A. 2015-04-10 — GenBank