Protein

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Genbank accession
YP_009783231.1 [GenBank]
Protein name
virion structural protein
RBP type
TF
Evidence RBPdetect2
Probability 0,74
Protein sequence
MAILRNVAKSDTFEKQRQTINQVAADLFAIGGGGSDLSTGLLRLGDGTRLEPSLSFVNDNSVGIFRPATKILAFVSDGKKLHQIQNESSLYYRNVILQKNVLETGGLQITAAGQDYDPGAFQNIAVIGGTGQAGSLNITVSEFDGSTVSGSGYTAPSSAGGTGGSNFSNVSLQGGNGADIVVTIEYDAGSTGFSSTSVTDYGDGNYLLNDVLTLPTSVNNITATVVDESNELTVADTTGILEGFLVTKVSGTGNLAAPIAGDITVSQILDATTIVVSSNGDADGSAVFNFEAPWGTGTGYSYTIDKLGVITNVSVNQEGEGYSVDDDLTVFNLDLTNPIEYIVDIEGLIKATFTTAVPSGTFVVGTSYNFSRADPFGGAPTTIAAVAEEVVTSGGSITLVTFSVGGTDSLSGDDTIGGLTIDTTENVNRYTIDTGDGVPTRYPNLSLFVNNTYKFDYSAAGSHPFRFSVHPRGTHNTIEDSVTVTEGSLTITLTDASNVLPGMTVERGEGGEITDTGDVSADTTVVSVNGNVITINEPITSSGPMPLLIKGVEYTGGEVVYENDYTNIQPTDSTPTLYYYCAQHPNMSGVDATTGQITIDPNNPKTFGSGLNILVTSIVSSDNITLDVSSGNVDAISLSTENADITTVNSTDVFANNFTASVEVNTDTITSPGGLLLQSTGLTSPVNIKGQKVSFVPPTENAIALLEVTTDTGDLTTTGTIKTTGTINSSDILKIENANIFTTGTNDLTLTPAPNRVVKVDGVTALIIPAGNTGARPGAGIVENGAIRYNTQTTQYEGYSSATSSWSSLGGIRDLDGNTYVTAEESVGANDDTFYFYNGNSNTLKITPTKFKFEELKQIASLNTSAPAYSEWFSNTPVSLGSYLKHRNNIYEVTLAGVTATDGNAPTHTAGTLTNNTAELTYSTTAVANLLFQEINEVQIDPFGDTYLTISGDLRLRNNIISTDINDLTLQPNAGKKVVVDSTSTLVLPVGDDNERGSPVTGSIRFNTSSSQFEGYDDNGNWGSLGGVKDVDQNTYIIPETSPGANENILYFYNDNTNTMQLSTASLDLTNIDTITSINNTSLALEFTKLTVDNNEFVLDNTVADRTFIYNTRQYLQFGMSGGLTVDPILTIEDSGDIFYNTAFGTGNEENLKILNNDLTEFEIRDYKVLTSKFDLVKGTSENGSALLYNKTDHKGCKVLVFMENALSNKSSMMEFSVIDNGTDIFYNEYGSLNSNEDGAIAEFDFDIEGNARISLTLTNDHSAADTVKFTVVSQIVK
Physico‐chemical
properties
protein length:1278 AA
molecular weight: 135209,84170 Da
isoelectric point:4,14182
aromaticity:0,07746
hydropathy:-0,14703

Domains

Domains [InterPro]
DC_0692
RBD
1–667
DC_0692 DC_0692
DC_0692
RBD
591–929
DC_0692 IPR027412
YP_009783231.1
1 1278
Architecture
RBD
RBD 1-1278
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Cyanophage S-RIM44
[NCBI] 		1278485 Uroviricota > Caudoviricetes > Pantevenvirales > Vellamovirus > Vellamovirus rhodeisland44
Host Synechococcus
[NCBI] 		1129 cellular organisms > Bacteria > Bacillati > Cyanobacteriota/Melainabacteria group > Cyanobacteriota > Cyanophyceae
Host Synechococcus sp.
[NCBI] 		1131 cellular organisms > Bacteria > Bacillati > Cyanobacteriota/Melainabacteria group > Cyanobacteriota > Cyanophyceae

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009783231.1 [NCBI]
Genbank nucleotide accession
NC_047734 [NCBI]
CDS location
range 86956 -> 90792
strand +
CDS
ATGGCAATTCTTAGAAACGTAGCTAAATCAGACACATTTGAGAAGCAACGACAAACTATCAACCAAGTAGCAGCAGATTTGTTTGCTATTGGTGGTGGTGGAAGCGATTTATCTACAGGACTTCTAAGATTAGGTGATGGAACCAGACTGGAACCATCACTTTCTTTTGTGAATGATAACTCTGTAGGTATTTTTAGACCAGCAACAAAGATACTAGCATTTGTATCTGATGGAAAGAAACTCCACCAGATACAAAATGAATCCTCCCTGTATTACAGGAATGTTATTCTTCAGAAAAATGTTCTTGAGACTGGAGGATTGCAAATCACTGCTGCTGGTCAAGACTACGATCCTGGAGCATTTCAGAATATTGCGGTCATCGGTGGAACTGGTCAAGCAGGATCTCTCAACATTACCGTTTCCGAATTTGATGGATCTACGGTATCAGGATCTGGATATACTGCACCATCTTCTGCTGGAGGAACTGGCGGATCAAATTTTTCTAATGTATCATTACAGGGTGGGAATGGTGCAGACATTGTTGTCACGATTGAATATGATGCAGGATCTACTGGATTTAGTTCTACATCAGTTACTGATTATGGAGATGGAAACTATCTACTTAACGATGTTCTAACTCTTCCAACTAGCGTCAATAATATTACGGCAACAGTTGTTGATGAGTCTAATGAACTTACAGTTGCAGATACTACTGGAATTCTTGAAGGATTTCTTGTAACAAAAGTATCAGGAACTGGTAACCTAGCGGCACCAATTGCTGGAGACATTACTGTAAGTCAAATTCTTGATGCTACTACAATCGTTGTTTCTAGTAATGGAGATGCAGATGGAAGTGCAGTATTTAACTTCGAGGCTCCATGGGGAACGGGAACTGGATATTCTTATACTATCGATAAACTAGGTGTTATAACTAATGTTTCTGTTAATCAAGAAGGTGAAGGATATAGTGTTGATGACGATTTAACTGTATTTAATTTAGATCTAACAAATCCAATTGAATACATTGTAGATATTGAAGGTCTAATTAAGGCAACGTTTACAACTGCTGTTCCATCTGGAACTTTTGTTGTAGGAACTTCATATAACTTCAGTAGAGCAGATCCCTTTGGTGGAGCACCAACTACAATTGCTGCAGTAGCAGAAGAAGTAGTAACATCTGGAGGATCAATTACACTAGTAACTTTCTCTGTTGGTGGAACTGATTCTCTTTCTGGCGATGACACTATTGGTGGTCTTACAATAGACACCACTGAGAATGTAAATAGGTATACGATTGATACTGGTGATGGTGTTCCTACTAGATATCCAAATCTATCTTTGTTTGTTAATAATACATACAAATTTGATTACTCTGCTGCTGGAAGTCATCCATTTAGATTCTCTGTTCACCCACGAGGAACTCACAATACTATTGAAGATAGTGTAACTGTTACTGAGGGATCTTTAACAATAACACTTACCGATGCTTCCAATGTTTTACCTGGAATGACGGTAGAAAGAGGAGAGGGTGGAGAGATTACTGATACTGGGGATGTTTCAGCAGATACTACTGTAGTATCAGTTAATGGAAATGTTATTACTATTAACGAACCTATAACATCAAGTGGTCCAATGCCACTCTTGATTAAAGGTGTTGAATACACTGGAGGAGAGGTAGTATATGAGAATGACTATACTAATATTCAACCAACAGATTCTACTCCTACACTTTATTATTATTGTGCTCAGCATCCAAATATGTCTGGTGTTGATGCCACTACTGGTCAGATCACTATTGATCCAAACAATCCAAAAACGTTTGGTTCTGGACTAAACATTTTAGTAACTTCTATTGTTTCATCAGATAATATTACTTTAGATGTAAGTTCTGGTAACGTTGATGCTATTTCACTTAGCACAGAAAATGCAGATATCACTACGGTAAATTCTACTGATGTATTTGCAAATAATTTTACTGCATCAGTAGAAGTAAATACAGATACTATTACTTCTCCTGGTGGTTTGCTACTGCAGTCTACTGGTCTTACAAGTCCAGTAAACATTAAAGGTCAAAAAGTATCTTTCGTTCCTCCAACTGAAAATGCTATTGCATTGTTGGAAGTTACTACAGATACTGGAGATCTCACAACTACAGGAACTATTAAAACTACGGGGACTATCAACTCATCTGATATCCTTAAGATTGAAAATGCTAATATTTTCACTACAGGAACTAATGATTTAACTTTGACTCCTGCTCCTAACAGAGTTGTTAAGGTTGATGGAGTTACTGCTCTTATCATTCCTGCTGGAAATACTGGAGCAAGACCTGGAGCAGGAATTGTAGAAAATGGTGCTATCAGATATAACACCCAGACTACTCAGTATGAAGGTTACAGTTCTGCAACTTCATCATGGTCTTCTCTTGGTGGTATTAGAGACCTTGATGGTAATACATATGTAACTGCAGAAGAAAGTGTAGGAGCAAACGATGATACTTTCTACTTCTATAACGGCAATTCAAACACTCTTAAAATTACTCCAACGAAATTTAAGTTTGAAGAATTAAAGCAGATTGCATCTCTTAATACATCTGCTCCAGCATATAGTGAATGGTTCTCCAACACACCTGTATCTCTTGGTTCTTATCTAAAGCATAGAAACAATATTTACGAAGTAACTCTTGCTGGTGTTACTGCTACCGATGGAAACGCTCCAACGCATACTGCTGGCACACTTACAAATAATACAGCAGAACTTACATATTCCACAACTGCTGTAGCAAACCTCTTATTCCAAGAAATTAATGAGGTCCAGATTGATCCGTTTGGTGACACATATCTTACTATTAGTGGAGATTTGCGTCTTCGTAATAACATCATTTCAACAGACATTAATGACTTAACTCTTCAACCAAATGCTGGCAAGAAAGTAGTTGTTGATTCTACTAGCACATTAGTTCTTCCTGTCGGTGATGATAATGAAAGAGGATCACCTGTTACAGGATCTATTAGATTCAACACATCTTCAAGTCAATTTGAAGGTTATGATGATAATGGTAACTGGGGTTCTCTTGGTGGCGTCAAGGACGTTGATCAAAATACTTACATTATTCCTGAGACTTCTCCTGGTGCTAACGAGAACATTCTCTACTTCTATAATGATAACACCAACACGATGCAACTTAGCACTGCATCTTTAGACTTGACTAATATTGATACCATTACATCAATCAATAATACAAGTCTTGCTCTTGAGTTCACTAAACTAACCGTTGATAACAATGAGTTTGTTCTAGATAATACAGTAGCAGATAGAACATTCATCTACAACACCAGACAATACCTACAGTTTGGTATGTCGGGTGGTCTGACTGTAGACCCAATTCTCACTATTGAAGATAGTGGAGATATTTTCTATAATACCGCATTCGGAACTGGTAATGAAGAAAACCTAAAAATATTAAATAATGATCTAACTGAATTTGAAATTAGAGATTACAAAGTTCTCACATCTAAGTTTGATCTTGTAAAAGGAACTTCAGAAAATGGTTCTGCTCTTCTATACAATAAAACAGATCACAAAGGATGTAAAGTTCTTGTGTTTATGGAGAATGCTTTGTCTAACAAATCTTCCATGATGGAGTTTAGTGTTATTGATAATGGCACTGACATTTTCTATAATGAATATGGAAGTTTAAACTCCAACGAAGATGGTGCCATAGCAGAATTTGACTTTGACATTGAAGGCAACGCTAGAATTTCTTTAACATTAACAAATGATCATTCCGCTGCTGACACCGTTAAGTTCACTGTAGTCTCTCAAATCGTAAAGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
fd05dfc81065f89882feb2e0fd4a3e08cca3d867047b606f994cf728499e574f
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,8497
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50