Protein

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Genbank accession
YBB95615.1 [GenBank]
Protein name
putative endolysin
RBP type
TF
Evidence RBPdetect
Probability 0,90
Protein sequence
MKVLRKGDRGDEVCQLQTLLNLCGYDVGKPDGIFGNNTFNQVVKFQKDNCLDSDGIVGKNTWAELFSKYSPPIPYKTIPMPTANKSRAAATPVMNAVENATGVRSQLLLTFASIESAFDYEIKAKTSSATGWFQFLTGTWKTMIENYGMKYGVLTDPTGALRKDPRISALMGAELIKENMNILRPVLKRDPTDTDLYLAHFFGPGAARRFLTTGQNELAATHFPKEAQANPSIFYNKDGSPKTIQEVYNLMDGKVAAHRK
Physico‐chemical
properties
protein length:260 AA
molecular weight: 28800,62480 Da
isoelectric point:9,09657
aromaticity:0,09615
hydropathy:-0,37500

Domains

Domains [InterPro]
IPR036366
ATT
1–78
IPR036366 G3DSA:1.10.530.10
G3DSA:1.10.101.10:FF:000016
Unmapped
1–70
G3DSA:1.10.101.10:FF:000016 G3DSA:1.10.530.10:FF:000045
IPR036365
RBD
2–73
IPR036365 IPR008258
IPR002477
CBM
9–65
IPR002477 IPR023346
YBB95615.1
1 260
Architecture
ATT
RBD
STR
RBD
ATT 1-78 | RBD 79-95 | STR 96-223 | RBD 224-260
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage vB_PaeC_EG2
[NCBI] 		3455811 No lineage information
Host Pseudomonas aeruginosa
[NCBI] 		287 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pseudomonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YBB95615.1 [NCBI]
Genbank nucleotide accession
PV985319 [NCBI]
CDS location
range 154740 -> 155522
strand +
CDS
ATGAAAGTATTACGCAAAGGCGATAGGGGTGATGAGGTATGTCAACTCCAGACACTCTTAAATTTATGTGGCTATGATGTTGGAAAGCCAGATGGTATTTTTGGAAATAACACCTTTAATCAGGTAGTTAAATTTCAAAAAGACAATTGTCTAGATAGTGATGGTATTGTAGGTAAGAATACTTGGGCTGAATTATTCAGTAAATATTCTCCACCTATTCCTTATAAAACTATCCCTATGCCAACTGCAAATAAATCACGTGCAGCTGCAACTCCAGTTATGAATGCAGTAGAAAATGCTACTGGCGTTCGTAGCCAGTTGCTATTAACATTTGCTTCTATTGAATCAGCATTCGATTACGAAATAAAAGCTAAGACTTCATCAGCTACTGGTTGGTTCCAATTCCTTACTGGAACATGGAAAACAATGATTGAAAATTATGGCATGAAGTATGGCGTACTTACTGATCCAACTGGAGCATTACGTAAAGATCCACGTATAAGTGCTTTAATGGGTGCCGAACTAATTAAAGAGAATATGAATATTCTTCGTCCTGTCCTTAAACGTGACCCAACTGATACTGATCTTTATTTAGCTCACTTCTTTGGGCCTGGTGCAGCCCGTCGTTTCCTGACCACTGGACAGAATGAATTAGCTGCTACCCATTTCCCAAAAGAAGCTCAGGCAAACCCATCTATTTTTTATAACAAAGATGGGTCACCTAAAACCATTCAAGAAGTTTATAACCTAATGGATGGTAAAGTTGCAGCACATAGAAAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
e2e1ce191572ae6fcc32e943c86b0513b3758ea52249d1452e8be3a61fe4e7f6
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,9556
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genomic Characterization of Lytic Bacteriophages Targeting Pseudomonas aeruginosa Ismail,G.H., Elariny,E.Y.T., Abdel-Haliem,M.E.F., Sobhy,N.M., Youssef,C.R.B. and Tartor,Y.H. — — GenBank