Protein

View in Explore
Genbank accession
QNH71364.1 [GenBank]
Protein name
polysaccharidase
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
TSP
Evidence RBPdetect2
Probability 0,93
Protein sequence
MARKTIDDLPVATPEAVATGSLLIADENGLEYRATTAIIGGVHLYFTAEDDQTPWIYGRLTSPGRTVEEITVTFVAVPRGGGTTLTKTAKTDALGNFTYNFTTLVRGVTYDITASVAPYLAEVTVKYVAPLSAPIDTPVATSTAKVGDTITVSAPNFDSSPTSFRYRYLRGPNYIIPGATENVYTLVADDDADVITAQVQAINAGGESIWYSANPIGPVSNKTSVAIDDPVIAGNTTLGGRLALVSPGTATENAVVKSDEWQLDGVKIPSTKAPVKRYLSGAANGSAPTAYPTGNNHFGVSFTGSAYSGSNTYSYSIAASATENDYIVNSTGIAGGNEGPQVYDLYMRHLNTNSAIRIKMYASRYNAGVRQGDEVQMAKVGATVGQEYAALGVTPNAVARWTVTADFGEWVAGDYLVFRQQATNISSSGSNNYQWDARAGASYAMLPIGSVQDIQKTLESFTSKADMANKAARLKQTLSNGFNEVVLYSNEIVYEAAVTQTAVPANLTLPTIVAPSARANTTWQADLGAWSNQPTSYGVQWTDDGVDIAGATLMNYKSSTAQEGHDISFYVIAENGIGFSEPAVAEPLTVQAAATYYNIATGNDLNDGSTPLLAKQSLNGSDSIASGSTAILAGDFGTRLKLGTGRNYEGLGAGLTSIGSLTTQYAIDHYTDDGSLGRSNVKLSKMSINSADRAILARQGSNWVLEDIVIDSAGFGAGVIAENASGIMFYKNNGITMRRCSLLNIKSDGLYSDSNDRVLVEDCLFLPVNTAEGDTIQTRADRTSSSGAPGPHQKGFIMSGTFLDMHSKKTGSGKGCLVTNMADYVYCHDNQLDGNNFVHGTDEGDCQVYCRNTNRYARMNSYSFGYGIGGYDNQPASYNHQLYDNSWYDINRALTFTGISVTGYSGVKSGRVDIVAHDETIVKCASGIRIDRPTSGMFRGFVFHNVTRPVDRVLTTLPPGGEIQAFISDSHYTYNGSILVPPTVTTHAVISGDRTVGSELTGPNSVFDTTAVLTAFPGAVITRSYQWRRHKPQVQWAGWSEHLGWKCEWIAGATSASYTITDDDQGCLISRVDRIHLSFTEASVAKVVTALSYDASYATSTPIPRSGDLAVPLPVIPSTGTVSFAAAEGAVALNLPALITGETRTLLNPSRAHEVYTGNLLTVDSNGDILKGAGTFTLGQVFGMKLRQKRGIDTVDHVINFTVVA
Physico‐chemical
properties
protein length:1205 AA
molecular weight: 128265,27740 Da
isoelectric point:5,23791
aromaticity:0,08797
hydropathy:-0,14722

Domains

Domains [InterPro]
G3DSA:2.60.40.2700
132–218
G3DSA:2.60.40.2700 IPR011050 G3DSA:2.60.40.2700
QNH71364.1
1 1205
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Rhizobium phage AF3
[NCBI] 		2763529 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QNH71364.1 [NCBI]
Genbank nucleotide accession
MT778837 [NCBI]
CDS location
range 89345 -> 92962
strand -
CDS
ATGGCACGTAAAACTATCGATGATCTTCCAGTTGCGACTCCTGAAGCCGTAGCTACTGGAAGTCTGCTCATCGCTGATGAGAACGGCTTGGAGTATCGAGCAACGACTGCCATTATCGGCGGTGTTCATCTGTACTTCACTGCTGAAGACGATCAGACACCGTGGATCTATGGACGACTCACAAGTCCTGGTCGCACGGTCGAAGAAATCACTGTGACCTTCGTTGCCGTTCCTCGCGGCGGTGGCACGACACTCACGAAGACCGCAAAGACTGACGCTCTCGGCAACTTCACGTACAACTTCACGACTCTCGTTCGTGGCGTCACGTACGACATCACGGCAAGCGTTGCTCCGTACCTCGCAGAAGTGACTGTCAAGTATGTCGCTCCTCTATCTGCTCCGATCGACACGCCTGTTGCAACTTCGACAGCTAAGGTCGGCGACACCATCACCGTTTCAGCTCCGAACTTCGACAGCAGTCCGACTTCGTTCCGCTATCGGTATCTTCGTGGTCCGAACTACATCATTCCTGGAGCAACCGAGAATGTCTACACTCTCGTAGCTGACGACGATGCTGACGTCATCACCGCTCAGGTCCAGGCAATTAACGCAGGAGGCGAGAGCATCTGGTACAGTGCAAATCCGATCGGACCTGTCTCGAACAAGACGTCCGTAGCGATCGACGATCCTGTCATCGCTGGTAACACGACTCTCGGTGGCCGACTCGCACTCGTGTCTCCTGGAACCGCAACAGAAAACGCTGTCGTCAAGTCTGACGAATGGCAACTCGACGGCGTGAAGATCCCTTCGACGAAAGCACCTGTGAAACGTTATCTCAGTGGTGCAGCCAACGGTTCTGCTCCGACTGCATATCCGACCGGCAATAACCACTTTGGCGTCAGTTTCACTGGTTCTGCTTACAGCGGTTCGAACACCTACAGCTATTCGATCGCTGCAAGTGCGACCGAGAACGACTACATCGTGAATTCGACCGGAATTGCTGGTGGTAACGAGGGTCCTCAGGTCTATGATCTGTACATGAGGCACTTGAACACGAACTCTGCAATTCGTATCAAGATGTATGCTTCGAGATACAATGCAGGCGTTCGCCAAGGCGACGAAGTTCAGATGGCGAAAGTCGGAGCTACTGTTGGTCAGGAATACGCAGCTCTCGGCGTCACTCCTAACGCAGTCGCTAGGTGGACTGTGACCGCAGATTTCGGCGAGTGGGTTGCCGGTGACTATCTCGTCTTCCGTCAGCAGGCTACGAACATCTCGAGCTCTGGTTCCAACAACTATCAGTGGGATGCACGAGCTGGCGCCAGCTATGCCATGCTTCCGATCGGTTCGGTCCAGGATATTCAGAAGACTCTGGAATCTTTCACCAGTAAGGCTGATATGGCAAACAAGGCTGCGAGACTCAAGCAGACTTTGTCAAACGGCTTCAACGAGGTCGTTCTGTATTCGAACGAAATCGTCTACGAAGCTGCTGTAACTCAGACTGCTGTTCCTGCCAACCTGACTCTTCCGACGATCGTCGCTCCTTCCGCAAGAGCGAACACTACTTGGCAAGCAGATCTCGGAGCATGGAGCAATCAGCCTACTTCGTACGGTGTCCAGTGGACAGACGACGGTGTCGACATCGCCGGTGCGACTCTGATGAACTACAAGTCGTCGACTGCTCAAGAAGGCCATGACATCTCGTTCTACGTCATTGCTGAAAATGGCATCGGCTTCTCTGAACCTGCTGTCGCTGAACCTCTCACGGTTCAAGCTGCTGCCACGTACTACAACATCGCCACTGGTAACGATCTGAACGACGGCTCCACACCGTTGCTCGCGAAACAGTCTCTGAATGGTTCGGACTCGATCGCTTCCGGTTCGACGGCAATTCTCGCTGGTGACTTCGGCACTCGTCTGAAACTCGGCACCGGCAGAAACTACGAAGGTCTCGGCGCTGGACTCACGTCTATCGGTTCGTTGACGACTCAGTACGCAATCGATCACTACACCGACGACGGTTCTCTCGGTAGATCCAACGTCAAACTCTCGAAAATGAGCATCAACTCTGCTGACCGTGCCATCTTGGCTCGTCAAGGATCGAACTGGGTTCTCGAAGACATCGTTATCGACAGTGCCGGCTTCGGAGCTGGTGTCATTGCTGAAAACGCTTCTGGTATCATGTTCTACAAGAATAACGGCATCACGATGCGTCGATGCTCGCTTCTGAACATCAAGTCTGACGGCCTTTACTCAGACTCGAACGACAGAGTTCTTGTTGAAGATTGTCTCTTCCTTCCTGTGAACACAGCAGAAGGCGATACGATCCAGACTCGCGCCGACAGAACTTCGAGCAGTGGTGCACCTGGTCCTCACCAAAAGGGCTTCATCATGAGCGGAACCTTCCTCGACATGCACTCGAAGAAGACCGGATCTGGTAAAGGCTGCTTGGTCACCAACATGGCCGACTACGTCTACTGCCATGACAACCAACTCGACGGCAATAACTTCGTCCACGGTACTGACGAAGGCGACTGCCAGGTCTACTGCCGCAACACCAACCGCTACGCTCGAATGAACAGCTACTCATTCGGCTACGGCATCGGCGGCTACGACAACCAGCCTGCTTCGTACAATCACCAGCTCTACGATAACTCGTGGTACGACATCAACCGTGCTCTGACCTTCACCGGCATCTCGGTGACAGGCTACAGCGGTGTGAAGTCTGGACGTGTCGATATCGTGGCTCATGACGAAACCATCGTCAAGTGTGCTTCTGGTATTCGTATTGACCGTCCGACGTCCGGCATGTTCAGAGGCTTCGTCTTCCATAACGTTACGAGACCTGTCGACCGAGTGCTCACGACTCTGCCTCCTGGCGGTGAGATCCAGGCGTTCATCTCCGACAGCCACTACACGTACAACGGATCGATCCTCGTACCTCCGACTGTGACAACTCATGCTGTCATCTCCGGTGATCGAACTGTCGGTTCTGAACTGACTGGTCCGAACAGCGTCTTCGATACGACTGCGGTGCTGACTGCATTCCCTGGTGCTGTGATCACTCGTTCGTATCAATGGCGTCGACACAAGCCGCAAGTCCAGTGGGCTGGTTGGTCTGAGCATCTCGGCTGGAAGTGCGAATGGATCGCTGGTGCAACGTCTGCGAGCTACACGATTACCGATGACGATCAAGGTTGCCTCATCAGTCGTGTCGATCGTATTCATCTGTCGTTCACTGAAGCAAGTGTCGCGAAGGTGGTTACGGCTCTCTCGTATGACGCATCATACGCAACTTCGACTCCGATCCCTCGCAGTGGTGATCTTGCTGTTCCGCTTCCGGTCATTCCGTCTACTGGAACAGTCTCATTCGCTGCCGCAGAAGGTGCAGTGGCTCTCAATCTCCCTGCTCTCATCACAGGCGAGACTCGGACACTTCTCAATCCTTCGAGAGCTCATGAAGTCTACACCGGCAACTTGCTGACTGTCGACTCCAACGGAGACATCTTGAAAGGAGCTGGCACGTTCACTCTCGGACAGGTGTTCGGTATGAAGCTGCGCCAGAAACGAGGCATCGATACCGTCGACCACGTCATCAACTTCACGGTCGTAGCGTAA

Tertiary structure

PDB ID
5640fd161f6b2b22b85039a9d32f4637e9a6864855d84bb75b2bf332770599ea
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2350
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of Rhizobium leguminosarum bacteriophage vB_RlegM_AF3 Gunathilake,D., Mackenzie,K.D., Yost,C.K. and Hynes,M.F. 2020-03-12 — GenBank