Protein

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UniProt accession
A0A067YBJ9 [UniProt]
Protein name
Rhamnogalacturonase A/B/Epimerase-like pectate lyase domain-containing protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
TF
Evidence Phold
Probability 1,00
Protein sequence
MSLTKLTKPRARWATFRLNVADAVLRSLYEKILDNGVSGKDFGAVGDGIADDTKALELLFSYGGHVRLHPGTYRVSRRVNLSNGTKVIGGGHNSTFILAADKVSGDLTTMIGTSGTSSNLVTDAGIHGVTLDANFKFQSCAFMAWMNSCSFEDIKVRNPLKQLEENYRGGFIVLKSSFIHINKFRAYGIYQHDDISSSEYQSLSFTNSHHCWVKDAYVTQSDKAYHVGGKSSFIHFSEVEAVNTRNNGLYLIEDVSNITFNGFLLKATQEGIVMNADGKDRGIVINDGTISESTSRALALRSGEGYQLSNISVYNCYSGMAQSTNTEYSGVKNLQATNITIKGCKTERPLYLARNKNISISNLKILDAPTFTGNDVCRIAEDCDDISITDLYIDTRSNPLMYGIYIAPETGGSPNITVDGYEFKGITRDFVTKENSADTLFARGKLGQYNGTVKVIKGEGGSIGILSQDASVGAGQSVGEFYHEQSDPSGLGAGKVFSVKTSSLTSVGSTYQTEIYGRDTELVSVIKGGTMTIVLPTSPTGLPSGAIWNDSGTIRVVG
Physico‐chemical
properties
protein length:558 AA
molecular weight: 60290,91750 Da
isoelectric point:6,43198
aromaticity:0,08781
hydropathy:-0,20860

Domains

Domains [InterPro]
IPR012334
19–457
IPR012334
IPR024535
40–235
IPR024535 IPR011050
IPR011050
40–317
IPR011050
A0A067YBJ9
1 558
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage phi-A318
[NCBI] 		1151014 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio alginolyticus
[NCBI] 		663 Bacteria > Proteobacteria > Gammaproteobacteria > Vibrionales > Vibrionaceae > Vibrio

Coding sequence (CDS)

Coding sequence (CDS)

No CDS data available.

Gene Ontology

Description Category Evidence (source)
GO:0098015 virus tail Cellular Component IEA:UniProtKB-KW (UniProt)
GO:0098994 symbiont entry into host cell via disruption of host cell envelope Biological Process IEA:UniProtKB-KW (UniProt)
GO:0098996 symbiont entry into host cell via disruption of host cell glycocalyx Biological Process IEA:UniProtKB-KW (UniProt)

Tertiary structure

PDB ID
9b6d077dc8f3095b3aee07d97afa9652abbb331fdf68dde6a09fd54933f15fad
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7996
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50