Protein

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Genbank accession
AVO23965.1 [GenBank]
Protein name
hypothetical protein
RBP type
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,83
Protein sequence
MADLPEQPAGWPGIPMISTSDPVLGGQDGPANRQAAALISRLQTVRDLVDAATAALATVTPQVDQHVQTINALQASVSSVQTSVQTVSGVATAAQTAASVADAKAVAAQTAATAKAVRIDLGTVTVTYTASTALVAGARSIAVACTGAQVGDAIFVAATNAIPDGYAVGAAQCLVADTIRVSVIYPALSIGNSFSISLRVFALR
Physico‐chemical
properties
protein length:204 AA
molecular weight: 20357,86920 Da
isoelectric point:5,09274
aromaticity:0,03431
hydropathy:0,49804

Domains

Domains [InterPro]

No domain annotations available.

Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Xanthomonas phage XPP6
[NCBI] 		2099857 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AVO23965.1 [NCBI]
Genbank nucleotide accession
MG944231 [NCBI]
CDS location
range 15152 -> 15766
strand +
CDS
ATGGCCGATCTGCCCGAACAACCTGCCGGCTGGCCCGGTATCCCGATGATATCGACGTCCGACCCGGTCCTAGGCGGTCAAGACGGACCCGCCAATCGACAAGCTGCGGCGCTGATCTCGCGCTTACAGACGGTACGCGATCTCGTCGACGCAGCCACCGCCGCGCTCGCAACGGTGACCCCGCAGGTCGACCAGCACGTCCAGACGATCAACGCGCTGCAAGCCTCTGTCAGCTCCGTACAGACGTCCGTACAGACGGTCAGTGGGGTTGCCACGGCGGCTCAGACCGCGGCCTCTGTGGCCGACGCTAAGGCCGTTGCCGCGCAAACGGCCGCCACGGCCAAGGCGGTGCGCATCGACCTGGGAACTGTCACGGTTACCTACACTGCGAGCACCGCACTGGTGGCTGGCGCACGTTCGATTGCGGTCGCGTGCACCGGGGCTCAGGTCGGCGACGCGATCTTCGTCGCGGCGACCAACGCGATACCGGACGGCTACGCGGTCGGCGCGGCGCAATGTCTGGTCGCCGACACGATCCGCGTATCGGTGATCTACCCTGCGCTGAGCATCGGCAATAGCTTCAGCATCTCCTTGCGTGTCTTTGCGCTGCGGTAA

Tertiary structure

PDB ID
89762ce4fd53385609c082fdc7f23d03c7efbc4de5c0ad60d8e88c6b3030b950
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8678
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation, characterization and comparative genomics of Xanthomonas oryzae pv. oryzae bacteriophages Varga,I., Molnar,J., Gazdag,A., Szucs,D., Doffkay,Z., Valappil,S.K., Papp,S., Pinter,R., Vera Cruz,C.M., Ricardo,O., Vizi,T., Schneider,G., Rakhely,G. and Kovacs,T. 2019-07-03 — GenBank