Protein

View in Explore
Genbank accession
YP_009055365.1 [GenBank]
Protein name
tail protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,85
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MADLPKIYGSKGGSKKPHTPVEQEDNLISLNKIKVLLAVADGEVDSSFSLKDVYLADVPVQNQDNSFNYEGVTAEFRAGTQSQDYIAGLDGATSEIQVSREINKDTPYIIAVNNSQLSAIRVKLFWPRLVKQEENGDLNGTTCEYAIDLSVNGAAYTEYTRGVANGKTTTGYDRSIRVNLPAEFSSALVRIRKLTPDSTSSTLVNGMQITTYQEVIDAKFRYPLTALVYVEFSSDLFPNGIPTIAIKKKWKLIRVPTNYNPETRTYSGAWNGTFKMAWSDNPAWVLYDLVVSQRYGLDQRELGVEIDKWGLYEAAQFCDQMVPDGKGGMEPRYTCNVVIQQKVEAYQLIRDICSIFRGLTFYDGEQIGIVVDRPRQPSYVFTNDNVVDGLFNRTFSSDKSLYTTANVQFDDEQNNYQQDVEPVFDLEATRRFGYNPVDLTAIGCVRRSEANRRGRWLLKTNLRSETVTFTTGLEGMIPMIGDVIAVNDQAWSSNYTLNLSGRIVEATGLQVFVPFAIDADPGDRILINKPDGSPEYRTIASVSADKLTLELNTAFSFTPQPDTVFAIDKQNLALQQYVVTGIQKANTDGEDSFQYSITAVQYDPNKYDEIDYGVNIDDRPTSIVDPDRILPPENITVTSYSKVVQGLSVETMVIGYDKVQYAKTYNVQWRKNNGNWINVPETANTEVDIEGIYAGIYDVRVRAVTDQKSVSAWSDITTVSLTGKIGEPSEPPVITASDDEVFGIRVKWGFPTDSADTAYTELQQVPDNGDGTYNPESASLLTLVPYPQYEYWHTTLPAGNVRWYRARIIDRIGNVSPWTDFVRGMASDDVSAIIGDIKVDIESSDGYKYLLQNAIDANTDIQNQAEAIIENALANDTDVRVMKRENGARKAEYRQAVSLIADETQARVDALTQLKAQIDDEIVGQITTIETALATETEARATADTQLSARLGDNEAALNQKLDSYATVEGVGVQYGVKLGLKYNGVEYGAGMSMELTGSGGNVRSQFIFDANRFAISNGISSGSGQWSLPFVVENNQVFIQSAVIQDGSITNAKIGNRIQSNNYVAGSAGWAIDKSGFAELSNATVRGSLYANNGNFAFNGTNNTVVINNNGITVNLPNGGRVVVGVW
Physico‐chemical
properties
protein length:1128 AA
molecular weight: 124437,08840 Da
isoelectric point:4,62603
aromaticity:0,09397
hydropathy:-0,32668

Domains

Domains [InterPro]
DC_0014
STR
1–1128
DC_0014
IPR053171
Unmapped
7–887
IPR053171 Coil IPR015406
IPR055385
ATT
94–218
IPR055385 IPR032876 IPR013783 Coil
IPR003961
STR
631–719
IPR003961
IPR003961
STR
631–725
IPR003961
IPR036116
STR
660–719
IPR036116
YP_009055365.1
1 1128
Architecture
STR
ATT
STR
ATT
STR
STR 1-93 | ATT 94-218 | STR 219-341 | ATT 342-489 | STR 490-1128
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009055365.1
1 1128
Domain Start End Length (AA) Confidence
N-terminal 1 514 514 0,9397
Central domain 515 1061 548 0,0345
C-terminal 1062 1128 66 0,5494
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-514
Central
515-1061
C-terminal
1062-1128

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage vB_EcoS_AHS24
[NCBI] 		1416030 Uroviricota > Caudoviricetes > Drexlerviridae > Rogunavirus > Rogunavirus AHS24
Host Escherichia coli O157:H7
[NCBI] 		83334 Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacteriales > Enterobacteriaceae > Escherichia

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009055365.1 [NCBI]
Genbank nucleotide accession
NC_024784 [NCBI]
CDS location
range 17604 -> 20990
strand +
CDS
ATGGCCGATTTGCCAAAGATTTATGGAAGCAAGGGTGGTAGCAAGAAGCCGCACACGCCTGTAGAGCAAGAAGATAACCTGATTTCACTTAACAAGATTAAGGTGCTACTGGCTGTAGCTGATGGCGAAGTTGATTCTAGCTTCTCACTTAAGGATGTTTACCTTGCTGACGTTCCAGTACAGAACCAGGATAACTCATTCAACTATGAAGGTGTGACAGCTGAGTTTCGCGCCGGCACTCAATCCCAAGATTACATCGCAGGACTAGATGGCGCGACATCAGAGATTCAGGTTAGTCGTGAAATTAACAAAGACACACCTTACATCATCGCAGTTAACAACAGTCAGCTATCAGCAATCCGCGTTAAACTGTTCTGGCCTCGACTCGTTAAGCAAGAAGAGAATGGAGATTTAAATGGAACAACATGTGAATATGCAATCGATTTATCAGTTAATGGCGCAGCGTACACGGAATATACCAGAGGCGTGGCTAACGGTAAAACTACAACAGGTTACGACCGCAGCATCAGGGTTAACCTACCAGCCGAGTTTAGCAGCGCTCTTGTTCGTATTAGGAAGTTAACGCCAGACTCAACAAGTAGCACTCTGGTTAACGGAATGCAGATTACAACCTATCAGGAAGTAATCGACGCTAAGTTCCGCTACCCTCTTACGGCACTTGTTTATGTGGAGTTCAGTTCTGACCTGTTCCCTAATGGCATCCCAACGATAGCCATTAAGAAAAAGTGGAAGCTTATCCGTGTGCCGACAAACTACAATCCAGAGACAAGAACTTATAGCGGAGCATGGAATGGAACCTTTAAAATGGCATGGTCTGACAACCCGGCCTGGGTTTTATATGACCTGGTGGTTAGCCAGCGTTACGGTTTAGATCAGCGAGAACTTGGTGTTGAGATTGATAAATGGGGTCTGTATGAAGCAGCGCAATTCTGCGACCAGATGGTTCCTGATGGTAAGGGTGGAATGGAGCCGCGATATACTTGTAACGTTGTCATTCAGCAGAAAGTGGAAGCGTATCAGCTTATTCGTGACATCTGTTCTATCTTCCGCGGTTTAACCTTCTATGATGGTGAGCAAATCGGGATTGTTGTAGACAGGCCGCGCCAGCCAAGCTATGTGTTCACTAATGATAACGTTGTTGATGGATTGTTTAACAGGACATTCTCTAGCGACAAGAGCCTTTACACGACAGCCAACGTTCAGTTTGATGACGAGCAGAACAACTACCAGCAGGACGTAGAGCCAGTATTCGACTTAGAAGCAACACGCCGATTTGGTTACAACCCTGTAGACTTGACTGCAATTGGCTGCGTAAGGCGAAGCGAGGCTAACCGCCGTGGTCGTTGGTTGCTGAAAACAAACCTTCGCAGTGAAACGGTAACGTTCACAACTGGCCTCGAAGGCATGATTCCTATGATTGGTGATGTAATTGCTGTTAATGACCAGGCATGGTCAAGCAACTACACATTAAACCTTTCTGGTCGAATTGTTGAAGCTACAGGTTTGCAGGTCTTCGTACCATTCGCTATTGATGCTGACCCTGGCGACAGGATTTTAATCAACAAGCCAGATGGGAGCCCAGAGTACAGGACTATCGCTTCAGTATCTGCCGATAAGTTGACGCTTGAACTGAATACAGCATTCAGCTTCACACCTCAGCCGGATACGGTATTTGCAATCGACAAGCAGAATCTGGCGTTGCAGCAATACGTTGTGACAGGAATTCAAAAAGCAAACACGGACGGCGAGGATTCATTCCAGTACAGCATCACTGCGGTGCAGTATGACCCGAACAAGTATGACGAGATTGACTATGGTGTGAATATTGACGACAGGCCAACAAGTATCGTTGACCCTGACAGGATTTTGCCACCTGAAAATATCACCGTTACTAGTTACAGCAAGGTAGTTCAGGGTTTAAGCGTTGAGACGATGGTTATTGGTTACGACAAGGTGCAGTATGCGAAAACATACAACGTACAATGGCGTAAGAACAATGGTAACTGGATTAACGTACCAGAGACGGCTAACACCGAGGTTGATATTGAAGGAATTTACGCTGGCATCTACGACGTAAGGGTTCGTGCCGTAACTGACCAGAAATCAGTATCTGCCTGGTCTGATATAACGACAGTTAGCCTGACCGGCAAGATTGGTGAACCTTCGGAGCCGCCTGTAATTACCGCATCTGATGATGAGGTTTTCGGGATTAGGGTTAAGTGGGGTTTTCCTACTGATTCAGCTGACACTGCGTACACTGAGCTTCAGCAGGTTCCTGATAATGGTGACGGTACATACAATCCAGAGAGCGCATCGCTGCTTACACTGGTTCCGTATCCTCAGTACGAATACTGGCACACCACTTTACCAGCAGGTAACGTGAGGTGGTACAGAGCGAGGATTATTGACAGGATAGGTAACGTATCGCCATGGACTGATTTTGTAAGGGGCATGGCATCTGACGACGTAAGTGCAATAATTGGTGATATCAAGGTTGATATCGAAAGCTCTGATGGTTACAAGTACCTACTTCAGAACGCCATTGATGCAAACACGGATATCCAGAATCAGGCTGAGGCAATTATAGAGAACGCCCTGGCAAACGATACTGACGTTCGCGTTATGAAGCGCGAGAATGGCGCAAGGAAGGCTGAATATCGTCAGGCTGTAAGTTTGATTGCTGATGAAACTCAGGCCCGTGTGGACGCTCTCACGCAGCTTAAAGCGCAGATTGATGATGAGATTGTTGGTCAGATTACGACAATTGAAACCGCGCTTGCTACGGAGACCGAAGCCAGGGCTACAGCTGATACTCAATTAAGCGCAAGGCTTGGTGATAACGAGGCGGCTTTGAATCAGAAGCTTGACTCTTACGCTACGGTTGAAGGGGTTGGTGTTCAGTACGGCGTTAAGCTTGGCCTGAAGTACAATGGAGTTGAGTACGGCGCTGGAATGAGCATGGAGTTAACTGGTAGTGGTGGAAATGTTCGTAGTCAGTTTATTTTTGATGCTAACAGGTTCGCAATCAGTAACGGCATTAGTTCTGGTTCCGGTCAGTGGTCGTTACCTTTCGTTGTGGAGAATAACCAGGTGTTCATTCAGAGCGCGGTGATTCAGGATGGTTCAATTACTAACGCGAAGATTGGTAACAGGATTCAATCAAACAACTATGTTGCTGGTAGTGCTGGTTGGGCAATTGATAAATCTGGTTTTGCTGAGTTAAGTAACGCTACCGTTCGCGGTAGTTTGTACGCTAACAATGGTAACTTCGCGTTTAACGGAACCAACAATACTGTCGTAATAAACAATAACGGCATAACTGTTAATTTACCAAATGGAGGTAGGGTAGTGGTTGGAGTATGGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
295fa2eaa8c254205c24bca207d489aecf243a7d73279d5b00426a8f52b099d0
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7835
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Four Escherichia coli O157:H7 Phages: A New Bacteriophage Genus and Taxonomic Classification of T1-Like Phages Niu,Y.D., McAllister,T.A., Nash,J.H., Kropinski,A.M. and Stanford,K. 2014 24963920 GenBank