Protein

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Genbank accession
YP_010080915.1 [GenBank]
Protein name
virion structural protein
RBP type
TSP
Evidence DepoScope
Probability 0,99
Protein sequence
MNKMFSWLNFEELLIHNPIELINPSKDTISVAMSKKQYIEFFSNKYTYNGLYYDEEMDFCLFYYADPLQSYKEGDVYAQGYIDVEMKIYRVKWLCNVSIKLPLAPETTGNLLDVKDGAGFSGTGNGQSNMGIGWFHFNEWKKISQVFKAGDKITISCEIAFFDTELYSDSDAAHVRLQIAGGNWRQLFRVDVKNVNGKFYTREAFKTSEFTENPSHIVKVSQTMDIDQDFIAQNGDVNHIFFIFDRIPNGANIIVNDLKIELNGAEKKHIAYAYSSDGADRFSTIYPRFNLLEGTKDFSGYWYGESWGWEVDGTFKGLTVKKRRHQWGGLYKVFTAPKNGVYTFSAYVKSSGDNANIIRYTYKNNDYFGGERIGNNFDWFRDSYTVTLKAGDTFIVRYEITGWGVDTILWTAGHKWEEGSFATPYMPSESETTKSDRPSYIGQYTDYTLEDSTNPSSYTWREIQEDKLNVSKTEMVVNAKNKTITTVLNGALAKCTKDKDITGWRNSQPNANYNYRQPQYTLDIGADDFIISGYGLRGLKNG
Physico‐chemical
properties
protein length:542 AA
molecular weight: 62125,67000 Da
isoelectric point:5,56615
aromaticity:0,15129
hydropathy:-0,53229

Domains

Domains [InterPro]
DC_2006
STR
169–503
DC_2006
IPR008983
RBD
327–400
IPR008983
IPR008983
RBD
329–421
IPR008983
YP_010080915.1
1 542
Architecture
STR
STR 169-503 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010080915.1
1 542
Domain Start End Length (AA) Confidence
N-terminal 1 76 76 0,7023
Central domain 77 281 206 0,7079
C-terminal 282 542 260 0,3496
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-76
Central
77-281
C-terminal
282-542

Taxonomy

  Name Taxonomy ID Lineage
Phage Lactococcus phage vB_Llc_bIBBAm4
[NCBI] 		2305485 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010080915.1 [NCBI]
Genbank nucleotide accession
NC_055001 [NCBI]
CDS location
range 19433 -> 21061
strand +
CDS
ATGAATAAAATGTTTTCATGGTTAAATTTCGAGGAGTTATTAATTCATAACCCTATTGAGCTTATTAACCCTAGCAAAGATACAATAAGCGTAGCAATGAGTAAAAAGCAGTATATCGAGTTTTTTAGTAACAAATACACTTACAACGGTCTATATTATGACGAAGAAATGGACTTCTGTTTATTTTATTATGCTGACCCCTTACAGAGCTACAAAGAGGGCGATGTGTACGCTCAAGGGTATATAGATGTAGAAATGAAAATATACCGTGTAAAATGGTTGTGTAACGTTTCTATTAAACTTCCTCTAGCTCCTGAAACAACTGGAAATTTATTAGACGTAAAAGACGGTGCAGGCTTTTCTGGTACTGGTAACGGTCAATCAAACATGGGAATTGGTTGGTTCCATTTTAATGAATGGAAAAAAATCTCTCAAGTGTTCAAAGCAGGGGATAAAATAACCATATCTTGTGAAATTGCGTTTTTTGATACTGAATTATATAGCGATTCAGACGCTGCTCATGTACGGCTTCAAATCGCAGGGGGAAATTGGCGACAACTTTTCAGAGTAGATGTTAAAAATGTGAATGGCAAATTCTATACTAGAGAAGCATTTAAAACGTCAGAGTTCACGGAAAACCCTAGCCATATAGTTAAAGTATCTCAAACAATGGATATAGACCAAGACTTTATAGCACAAAATGGAGATGTTAATCATATCTTTTTTATATTTGATCGGATACCTAACGGTGCAAACATAATCGTTAATGACCTAAAAATTGAATTAAATGGTGCAGAGAAAAAGCATATCGCTTACGCTTATAGTTCAGACGGTGCAGATAGATTCTCAACTATTTATCCTAGGTTCAATCTTTTAGAGGGTACTAAAGACTTTAGCGGTTATTGGTACGGAGAGTCTTGGGGTTGGGAAGTTGACGGAACTTTTAAAGGTTTGACAGTCAAGAAAAGACGTCATCAATGGGGTGGACTTTATAAAGTGTTTACTGCACCTAAAAACGGAGTTTATACCTTTTCAGCTTATGTTAAAAGTTCAGGAGATAATGCAAATATAATAAGATACACCTATAAAAATAATGATTATTTTGGAGGAGAACGGATAGGAAATAACTTTGACTGGTTTAGAGATTCTTATACAGTAACTTTAAAAGCAGGCGACACTTTTATTGTTAGGTATGAAATAACTGGTTGGGGTGTTGATACAATTTTATGGACGGCAGGGCATAAATGGGAAGAGGGTTCTTTTGCTACTCCATATATGCCAAGTGAAAGCGAAACAACAAAATCAGACCGTCCTAGCTACATTGGACAATACACAGATTACACGCTAGAAGATAGCACAAACCCTAGTTCTTACACTTGGAGAGAAATACAAGAGGACAAATTGAATGTTTCAAAAACTGAAATGGTAGTAAATGCCAAAAATAAGACAATTACAACTGTTTTGAATGGTGCTTTAGCTAAATGTACAAAAGACAAAGATATCACAGGTTGGCGAAATTCACAACCTAATGCAAATTATAATTATAGACAACCGCAGTACACTTTAGACATCGGTGCAGATGACTTTATTATCAGCGGTTACGGTTTGAGAGGTTTGAAAAATGGATAG

Genome Context

Genome Context

Tertiary structure

PDB ID
23fa2edcf55f52224fd5f2f74a363fdbaa8e5feed825be3624d233cbc6744148
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6096
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Lactococcus Ceduovirus Phages Isolated from Industrial Dairy Plants-from Physiological to Genomic Analyses Chmielewska-Jeznach,M., Bardowski,J.K. and Szczepankowska,A.K. 2020 — GenBank