Protein

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Genbank accession
YP_010054278.1 [GenBank]
Protein name
tail fiber protein
RBP type
TSP
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MATTPTNKPIPSEDPRDLKFNAGKIDEVVTSDAHYYTDRFGVRRWTIAGFQYTAEEAIRNYGYITMDSFEDGAALTLPNQTLRYEATGEYYRWDGELPKIVPAGSTPDSTGGVKLGAWVSVGDAVLRGELNSPGEPLVDPTRVGVQQSGNLSQALYYVTPEQFGAIGDGTLHLLSEKYTTLTDAQLVYPLATSLSQSIDWAAMQKADTVARSLKCSVRCPTLKKYRFSSLDTLMLDINSCFIAGPQSDHFHGTMIIKDKPSVTSSTNIGDICIVKVKKASDTASTNGFVNGVVFQGFSLEWSNVAWMSAVKGDLSICLHMNDAIKAKVDVSVWGGEFGVYGYGCWGMVGTIRVLSCHKGIYFDPVSPTPEHTVPVGVTGPTTSFDLRVEIGGCPFPIYLDKCQYGFFRGYVEVLNSTEGAIWDSANETPIAVQLGSNCEYLTFELGVEFYNGLLFLADQNNKNITANFGFVYSITYMNSSGAHTARYTIANKYSQTEVTIPAATRAIFSFNNTGNDITVNGMNMSASANSFNNLESVDKYLYSALSGNRLFFNGGNVACTNYLKVSRANKRVIDYCRNNGLADALKPGPGWYYVGNGFYEQSTWTVSALDANGVVWVAAPTGFNLHKCEAYAVGGGGLSQGLGLLEVPSATLMKFILQGGDATRGIVHKSTVELQN
Physico‐chemical
properties
protein length:676 AA
molecular weight: 73398,80620 Da
isoelectric point:5,41729
aromaticity:0,11095
hydropathy:-0,11405

Domains

Domains [InterPro]
DC_1559
ATT
1–181
DC_1559
G3DSA:2.10.10.80
ATT
62–132
G3DSA:2.10.10.80
IPR040775
RBD
63–123
IPR040775
YP_010054278.1
1 676
Architecture
ATT
ATT 1-181 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010054278.1
1 676
Domain Start End Length (AA) Confidence
N-terminal 1 197 197 0,9934
Central domain 198 538 342 0,9849
C-terminal 539 676 137 0,9052
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-197
Central
198-538
C-terminal
539-676

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage C1
[NCBI] 		2340716 Uroviricota > Caudoviricetes > Deseoctovirus >
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010054278.1 [NCBI]
Genbank nucleotide accession
NC_054651.1 [NCBI]
CDS location
range 1156 -> 3186
strand -
CDS
ATGGCTACCACACCAACTAATAAACCAATTCCGTCAGAAGACCCGCGCGACCTCAAGTTTAACGCCGGGAAGATTGATGAGGTAGTGACATCTGATGCGCATTACTATACTGATCGCTTCGGCGTACGCCGCTGGACAATTGCTGGATTTCAGTACACAGCAGAAGAGGCTATCCGTAATTATGGCTACATCACAATGGATAGCTTCGAAGATGGTGCGGCACTGACGCTTCCCAATCAGACTCTGCGTTATGAAGCTACTGGAGAATATTACCGATGGGATGGTGAATTACCTAAAATAGTGCCTGCTGGTTCAACTCCAGATAGTACTGGCGGTGTTAAATTAGGAGCATGGGTTAGTGTCGGTGATGCAGTTTTAAGGGGTGAATTAAATTCACCCGGAGAACCATTAGTAGACCCAACTAGAGTAGGCGTTCAGCAATCTGGTAATTTATCTCAGGCATTATATTATGTAACACCAGAGCAGTTTGGAGCAATAGGAGATGGAACTCTTCATCTATTATCAGAAAAATACACCACTCTAACTGATGCGCAATTGGTGTATCCGCTTGCAACAAGTTTATCTCAGTCAATTGACTGGGCCGCAATGCAAAAAGCAGACACAGTAGCACGTAGTTTAAAGTGCTCAGTAAGATGCCCAACGTTGAAGAAATACAGATTCTCATCTCTCGACACATTGATGCTGGATATTAATAGTTGCTTTATTGCAGGCCCGCAGTCTGATCATTTTCATGGGACAATGATAATTAAAGATAAACCATCAGTAACATCATCAACAAATATTGGCGATATCTGCATTGTGAAAGTAAAAAAAGCATCTGATACAGCATCAACAAATGGGTTTGTAAATGGTGTTGTATTCCAGGGTTTTTCTCTTGAGTGGTCAAATGTTGCATGGATGTCTGCTGTTAAAGGTGACCTGTCAATTTGCCTTCATATGAATGATGCGATCAAAGCAAAAGTCGATGTAAGCGTGTGGGGCGGAGAGTTCGGTGTATATGGGTACGGATGTTGGGGGATGGTCGGTACTATACGTGTTTTGAGTTGTCATAAAGGGATCTATTTTGACCCTGTATCACCAACACCAGAACACACAGTTCCTGTTGGCGTTACAGGTCCAACTACTTCATTTGATCTGCGAGTTGAGATAGGAGGATGTCCATTCCCAATTTATCTTGACAAATGTCAGTATGGTTTTTTCCGTGGTTATGTAGAAGTTCTTAACTCAACCGAGGGAGCTATCTGGGATAGTGCAAACGAAACACCAATTGCAGTACAGCTGGGAAGCAATTGTGAGTACCTCACATTTGAACTAGGGGTTGAATTCTATAATGGGTTACTGTTCCTTGCTGACCAAAACAACAAAAACATAACTGCAAATTTTGGATTTGTTTATAGCATTACATACATGAACTCAAGCGGGGCACATACAGCAAGATACACAATTGCCAACAAATATTCTCAAACTGAAGTTACAATACCAGCAGCAACAAGAGCAATTTTTTCATTCAATAATACAGGTAATGACATTACTGTAAATGGCATGAATATGTCAGCATCTGCCAATTCATTTAACAATCTTGAGTCTGTAGATAAATATCTGTATTCAGCATTGTCAGGCAATAGATTGTTTTTCAACGGTGGGAATGTAGCATGTACTAACTATCTTAAAGTAAGCCGCGCAAACAAAAGAGTTATTGACTACTGTCGTAACAATGGCCTGGCTGATGCCCTTAAGCCTGGTCCTGGATGGTACTACGTAGGTAATGGATTTTACGAACAAAGCACATGGACAGTATCAGCCCTTGATGCTAATGGAGTGGTATGGGTTGCTGCGCCTACTGGGTTTAACTTACATAAATGTGAAGCTTATGCAGTTGGTGGCGGAGGTCTTTCACAGGGACTTGGATTATTAGAGGTTCCATCCGCCACACTTATGAAGTTCATCTTACAAGGTGGGGATGCGACCCGGGGTATTGTACATAAATCAACGGTTGAACTCCAAAACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
2fb5ac2c52a226b9f93d72a0222da1d350959b81750460b66d0639c69aae00e3
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7118
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Distribution characteristics of Escherichia coli phages in piglets intestinal isolated from Jiangsu and Anhui province Lin,Y., Zhou,B., Luo,J., Hua,J. and Zhang,M. 2014-08-20 — GenBank