Protein

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Genbank accession
ALM02446.1 [GenBank]
Protein name
putative colanic acid biosynthesis protein WcaM
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MLQSVKISELPSADTLTEDDLIVVDQPDDTKKATLFQVLNHLEDAVEQSVLAELAQPTGAGKSGLTQGGTVQDGIQYLTPEIYLNSGIYPSVTAALNQMVIDAAASSRQINADGVYNLTSGQTLRIEGVEWFGGTLIGTGATVVQVKNARLERAKFSKCNVRHVGGDFVCKNIRAENSTATAAILIGPLDSPGVVDIDGLTLANNNYGILGQGASGSPVTRISLNHIYATAHKGDPIELNLVQTWGRKEIRNVIINGVTGTGNSNDFWGIGIGIAGAGNYALETPDSDMASNILIENVVAIGCRQPIHLEKSRDFTIRGVQLYPDSSINTASGLIPTGISVVGCREFFIEQWSITPVDIATTPAITTSWGVVSGAYTGPCRNFTIRDGNTSGRLSIYTGASSTVGSDIDISNVVANGAGSFIKGYMSNLRIKGLKANALTIDMAHTTGEGVGILTRNSQITCSFDGVISQDENNAPNGTALHIYADILDVRGCNFPIVKSSAANGGRGALVQPGRIYLAAGTTFPVGHPFVQGDRVYKSSTDPAIAGGGWLVTKSGALVNSNDAIKAAAAGQNYIEANTAGLDWAATNTKSAGLQITIPGAGVDGADLKTVVTRAPYVSGGIYRVTINPAIVTAVPAGTPIYATYPIETVAFS
Physico‐chemical
properties
protein length:653 AA
molecular weight: 68092,80110 Da
isoelectric point:5,22637
aromaticity:0,06279
hydropathy:0,04487

Domains

Domains [InterPro]
DC_0079
ATT
2–35
DC_0079 DC_0354 IPR011050 DC_0045
IPR023882
RBD
118–389
IPR023882
ALM02446.1
1 653
Architecture
ATT
ATT
STR
RBD
ATT 2-35 | ATT 62-119 | STR 120-336 | RBD 337-653
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
ALM02446.1
1 653
Domain Start End Length (AA) Confidence
N-terminal 1 92 92 0,9891
Central domain 93 512 421 0,9952
C-terminal 513 653 140 0,9869
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-92
Central
93-512
C-terminal
513-653

Taxonomy

  Name Taxonomy ID Lineage
Phage Klebsiella phage vB_KpnM_KB57
[NCBI] 		1719140 Uroviricota > Caudoviricetes > Vequintavirinae > Mydovirus KB57 >
Host Klebsiella pneumoniae
[NCBI] 		573 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ALM02446.1 [NCBI]
Genbank nucleotide accession
KT934943 [NCBI]
CDS location
range 37540 -> 39501
strand -
CDS
ATGCTACAGAGTGTTAAAATTTCAGAGTTGCCAAGTGCGGACACTCTAACAGAAGATGACCTAATCGTAGTTGATCAGCCAGATGATACAAAGAAGGCAACTTTATTTCAAGTTTTAAATCATCTTGAAGATGCCGTTGAACAGTCAGTGCTGGCGGAGCTGGCACAGCCAACTGGAGCAGGGAAATCAGGTCTTACGCAAGGAGGGACGGTACAAGACGGCATTCAATATCTTACACCCGAAATTTACTTGAATTCTGGAATTTATCCTAGTGTTACAGCCGCCCTGAACCAAATGGTAATAGATGCGGCGGCATCTTCACGCCAGATTAATGCAGATGGTGTTTATAACCTTACATCGGGTCAAACGCTACGTATTGAAGGTGTTGAATGGTTCGGAGGAACCTTAATAGGTACTGGTGCAACAGTTGTTCAGGTCAAGAACGCGAGACTTGAAAGGGCTAAATTTAGCAAATGCAATGTTCGCCATGTTGGTGGCGACTTTGTATGTAAGAATATTCGCGCGGAGAATTCAACCGCAACAGCCGCAATCCTTATCGGCCCTCTGGATTCACCTGGTGTGGTTGACATTGACGGGCTTACGTTAGCGAACAACAACTATGGGATTCTTGGGCAGGGAGCATCAGGCTCGCCTGTTACTCGCATTTCTCTTAATCACATCTATGCAACAGCGCACAAGGGCGACCCTATAGAACTAAACCTTGTCCAGACATGGGGGAGGAAAGAAATCCGCAACGTCATCATTAATGGCGTCACAGGGACGGGGAACTCTAATGATTTTTGGGGAATTGGTATTGGCATTGCAGGTGCTGGAAATTATGCGCTGGAGACGCCAGATTCAGACATGGCTAGTAACATTCTGATTGAGAACGTCGTCGCCATCGGCTGCCGTCAGCCAATACACCTTGAAAAAAGCCGTGATTTTACTATTCGCGGGGTGCAGTTATACCCTGACAGCAGCATAAACACAGCATCCGGCCTTATTCCGACTGGTATTTCCGTTGTTGGTTGCCGAGAATTTTTTATTGAGCAATGGTCTATCACCCCAGTCGATATTGCCACCACACCAGCGATAACCACAAGCTGGGGTGTCGTATCTGGAGCCTATACAGGACCATGCAGAAACTTCACAATTCGCGATGGCAACACGTCTGGTAGATTATCAATATACACCGGGGCCAGTTCTACAGTTGGCTCGGATATTGATATTTCAAACGTTGTAGCAAATGGAGCTGGTTCTTTCATCAAAGGTTACATGAGCAACCTACGTATTAAAGGATTGAAAGCTAATGCACTAACTATTGATATGGCTCACACGACAGGTGAAGGGGTTGGTATATTAACAAGAAACAGCCAGATCACCTGTTCTTTTGATGGCGTTATTTCCCAGGATGAGAACAACGCACCAAACGGTACAGCACTCCATATCTATGCAGATATATTGGATGTTCGCGGTTGCAATTTTCCTATTGTCAAATCCTCTGCCGCCAACGGAGGAAGGGGGGCATTAGTCCAGCCAGGAAGAATATATTTAGCGGCAGGAACCACCTTCCCTGTAGGCCATCCATTCGTTCAGGGCGATCGTGTCTACAAGAGTTCAACAGATCCCGCTATTGCTGGAGGAGGCTGGCTCGTCACTAAGAGCGGGGCGCTGGTGAACAGTAACGATGCTATCAAGGCAGCCGCTGCCGGACAGAATTACATAGAAGCTAATACGGCAGGTCTAGATTGGGCCGCGACTAATACAAAGTCAGCAGGCCTCCAAATAACTATACCTGGAGCGGGAGTTGATGGGGCAGATTTAAAAACTGTCGTGACTAGAGCGCCTTACGTATCGGGCGGGATTTATCGCGTGACAATAAATCCGGCGATAGTAACCGCTGTTCCGGCAGGAACACCGATTTACGCTACCTACCCTATAGAAACAGTAGCTTTTTCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
3379cb01875c0f096a7bd491b0280e0719325ed3637877c609b0e585e74e24b8
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7858
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of Klebsiella pneumoniae bacteriophage vB_KpnM_KB57 Volozhantsev,N.V., Popova,A.V., Krasilnikova,V.M. and Bogun,A.G. 2017-09-14 — GenBank