Protein

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Genbank accession
YP_009790378.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,89
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MALYREGKAAIAADGTVTGTGTKWQSSLSLIRPGATIMFLSSPIQMAVVNKVVSDTEIKAITTNGAVVASTDYAILLSDSLTVDGLAQDVAETLRYYQSQETVIADAVEFFKSFDFDSLQNLANQIKADSEAAGVSATAAAASESAAKTSETNAKESEVAVETTRDQVQQIINDAGEQSTLVVLAQPQGAGKSGMLQGGTVQDALKSCVSVFAHGAKGDFNPTTKTGTDDTQAFKDAISYAISHGLRNVYVPSGHYLITDELNIGGQSFISGEGNRDYWRGGVDGVHIFGDGPYSTILVFDPPTANTPCLSARGGWGTHSPRAISQLAIEPLNWADYSSTAEGTGILLHGCCFVPVTDVHIGRFHRGIHLWNELQGPDDTANTFTKGDFTEFNRMTRVRIFNSDIGADYHVTKGNNSFHGNSWADCMIQINSYGGIGIRMWDDGTRAGVVAPTNPYYQYIANVYSNNFDINFFGSDARTCYLLSLIRAQGRGCSGTMTVEAAVTLKTDSYEWFQSFGSLHSISAINVSAGNTDTATRPVAFMWNNAAYPQNFFDGVDPVLLPGSYPRQFDLNNGGNTGMDLLNIRGAQTGNAWSQQQSSVSVGWLFTVRSQSGSRPAQRTVWQFSYDGTKIKAPSADSVGLYNSTVGIDITATAAVPSATNAINLGSSSLRFNTGYFNGWNIGSAGLVPSADASVNAGSSTFRINRSYVISRYYTATVFDSAGTGSPEGVVAARIGSTYRRTDGVAGSTFYVKEAGTGNTGWVAK
Physico‐chemical
properties
protein length:765 AA
molecular weight: 81490,19980 Da
isoelectric point:5,24086
aromaticity:0,09935
hydropathy:-0,17660

Domains

Domains [InterPro]
DC_0313
STR
1–763
DC_0313
IPR011050
STR
207–466
IPR011050
IPR012334
STR
209–501
IPR012334
YP_009790378.1
1 765
Architecture
STR
STR 1-763 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009790378.1
1 765
Domain Start End Length (AA) Confidence
N-terminal 1 218 218 0,9940
Central domain 219 564 347 0,9885
C-terminal 565 765 200 0,9183
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-218
Central
219-564
C-terminal
565-765

Taxonomy

  Name Taxonomy ID Lineage
Phage Klebsiella phage KOX1
[NCBI] 		1970798 Uroviricota > Caudoviricetes > Drexlerviridae > Webervirus KOX1 >
Host Klebsiella oxytoca
[NCBI] 		571 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009790378.1 [NCBI]
Genbank nucleotide accession
NC_047825.1 [NCBI]
CDS location
range 20349 -> 22646
strand -
CDS
ATGGCACTATACAGAGAAGGCAAAGCGGCTATTGCCGCAGACGGAACTGTTACCGGGACTGGCACAAAATGGCAATCATCGCTTTCGCTGATTCGCCCTGGTGCGACGATTATGTTTTTGTCGTCACCGATTCAAATGGCCGTCGTAAACAAGGTGGTAAGCGATACTGAAATTAAAGCAATTACCACAAACGGCGCTGTCGTAGCGTCTACTGACTATGCGATCCTTTTAAGCGACTCGCTGACCGTCGACGGACTGGCGCAAGATGTTGCGGAAACCCTGCGATACTATCAGTCGCAAGAAACCGTAATTGCGGATGCAGTCGAGTTCTTTAAGAGCTTTGATTTCGATTCCCTGCAAAATCTTGCCAACCAAATTAAGGCAGACTCCGAGGCTGCGGGCGTAAGCGCTACGGCTGCTGCGGCGTCTGAAAGCGCTGCAAAAACATCGGAAACCAATGCAAAAGAATCAGAGGTTGCAGTGGAGACTACAAGAGACCAAGTACAGCAGATCATCAATGATGCTGGTGAACAGTCAACGCTGGTGGTGCTGGCGCAGCCGCAAGGCGCTGGTAAGTCTGGAATGTTGCAGGGTGGAACTGTCCAGGATGCGTTAAAAAGCTGCGTTTCCGTATTCGCACATGGTGCAAAAGGTGATTTCAATCCAACGACCAAAACCGGAACAGATGACACACAGGCATTCAAGGATGCCATTTCATACGCCATAAGTCACGGATTGCGGAACGTTTACGTTCCTTCCGGTCACTACCTGATAACCGATGAATTAAATATTGGCGGACAAAGTTTCATCTCTGGTGAAGGAAATAGAGACTATTGGCGAGGGGGGGTTGACGGGGTTCACATTTTTGGCGACGGGCCATACAGCACAATACTTGTTTTCGACCCGCCAACAGCTAACACGCCATGCTTATCCGCACGCGGAGGATGGGGCACACATTCACCGCGCGCCATATCCCAACTGGCAATCGAGCCACTTAATTGGGCAGATTACAGCAGTACAGCAGAGGGAACAGGCATACTGTTGCATGGTTGCTGTTTCGTTCCTGTAACAGATGTTCACATTGGCCGGTTTCACCGTGGAATTCACTTATGGAATGAGTTACAAGGGCCGGATGATACAGCAAATACATTCACGAAAGGCGACTTTACCGAATTTAACCGCATGACGCGCGTTCGAATTTTCAATAGCGATATTGGTGCGGATTATCATGTAACCAAAGGTAATAACTCATTCCACGGCAATTCGTGGGCCGACTGTATGATTCAGATAAACTCATACGGCGGGATTGGTATTCGCATGTGGGACGATGGCACGCGAGCAGGTGTTGTTGCGCCGACAAACCCGTATTACCAGTATATTGCCAACGTCTACAGCAATAATTTTGATATTAACTTTTTTGGCAGCGATGCCAGAACATGCTACTTATTATCTCTGATTAGGGCGCAAGGGCGCGGTTGTTCAGGAACGATGACCGTTGAGGCTGCCGTCACCCTGAAAACAGATAGCTATGAATGGTTTCAGAGTTTTGGCAGCCTGCATTCGATTTCAGCAATAAATGTTAGCGCAGGAAATACAGACACAGCAACGCGCCCGGTTGCATTTATGTGGAATAACGCGGCTTATCCGCAGAATTTCTTTGATGGCGTTGACCCTGTTTTATTGCCTGGCTCTTATCCTCGGCAATTCGATCTGAACAACGGTGGCAACACTGGTATGGATTTGCTTAATATCAGGGGTGCGCAGACTGGTAACGCCTGGTCACAGCAGCAAAGTTCTGTTTCTGTTGGCTGGCTATTCACCGTAAGAAGTCAGAGCGGTTCCCGCCCTGCACAACGTACTGTATGGCAGTTTTCATATGACGGAACAAAAATTAAGGCACCGTCAGCGGATAGTGTAGGTCTGTACAATTCTACAGTGGGGATAGACATCACTGCTACGGCTGCGGTGCCATCAGCAACAAATGCCATCAATTTGGGTTCTTCATCGTTACGATTTAATACTGGTTATTTTAACGGTTGGAATATTGGTTCGGCCGGGCTTGTACCGTCTGCTGATGCCAGCGTTAACGCAGGTAGTTCAACATTCAGAATAAACCGAAGCTATGTTATTAGCCGCTACTATACGGCAACGGTATTCGATAGCGCCGGAACAGGCAGCCCGGAAGGTGTTGTGGCTGCTAGAATTGGATCAACCTATCGCCGCACTGATGGCGTAGCAGGTTCAACATTTTACGTCAAAGAAGCCGGAACAGGTAACACTGGATGGGTGGCAAAATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
88ce08a015cf490352b15ac07afb441d2e450652e0f5a0a6d16bc01f9ecc50c0
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6660
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization and formulation into solid dosage forms of a novel bacteriophage lytic against Klebsiella oxytoca - potential to design a novel therapy against antibiotic induced GI disruption Brown,T.L., Petrovski,S., Hoyle,D., Chan,M., Lock,P. and Tucci,J. 2017-08-17 — GenBank