Protein

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Genbank accession
YP_009320529.1 [GenBank]
Protein name
virion structural protein
RBP type
TSP
Evidence RBPdetect
Probability 0,85
Protein sequence
MSTLQVRNLQGLSNFNNEVALPNGHTLKIDGNLEVPIWNNSGRPTTPSVGFIGYNTEDEVLEFYNGTEWQGAGSAKLDGSSPDKASTSGLQLVSDNPGISSGLYWIKSSLMPNALQMYVDTTQDGGGYDFYATKGSGPNISSVTSTHAGTALGLELWEGRSRQCWLAATQAVNALDSGNFSNYWEGVGHVYKPNGGGNYTGCIMRSSYYGGNNCADWRVKSGNRWWIRDSTHSEPNGDYTANGFQRIYSGSRPSVGSVSTSMGFNDGGAYAIGNYYLLSTNAKT
Physico‐chemical
properties
protein length:284 AA
molecular weight: 30522,98320 Da
isoelectric point:5,34448
aromaticity:0,11268
hydropathy:-0,51937

Domains

Domains [InterPro]
DC_0326
STR
1–281
DC_0326
YP_009320529.1
1 284
Architecture
STR
STR 1-281 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009320529.1
1 284
Domain Start End Length (AA) Confidence
N-terminal 1 80 80 0,2870
Central domain 81 273 194 0,0181
C-terminal 274 284 10 0,9834
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-80
Central
81-273
C-terminal
274-284

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage S-CAM4
[NCBI] 		1883367 Uroviricota > Caudoviricetes > Pantevenvirales > Potamoivirus > Potamoivirus cam4
Host Synechococcus sp.
[NCBI] 		1131 cellular organisms > Bacteria > Bacillati > Cyanobacteriota/Melainabacteria group > Cyanobacteriota > Cyanophyceae

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009320529.1 [NCBI]
Genbank nucleotide accession
NC_031900 [NCBI]
CDS location
range 96151 -> 97005
strand +
CDS
ATGAGCACATTACAAGTTAGAAATCTTCAAGGACTATCAAATTTCAATAATGAAGTTGCTTTACCAAATGGGCACACTCTTAAAATTGATGGAAATTTGGAAGTCCCTATATGGAATAATTCTGGACGACCTACGACCCCATCAGTAGGATTTATTGGATACAATACAGAAGATGAAGTTTTAGAATTTTACAACGGAACAGAATGGCAAGGAGCTGGTTCAGCTAAATTAGACGGGTCATCTCCAGATAAAGCATCTACATCTGGTCTTCAATTAGTATCTGATAATCCTGGAATATCTAGTGGATTATATTGGATCAAATCTTCTTTAATGCCTAATGCATTACAGATGTATGTTGATACCACTCAAGATGGTGGTGGATATGATTTTTATGCCACAAAAGGATCTGGTCCTAATATTTCTTCTGTTACATCTACTCATGCTGGAACAGCACTTGGGTTAGAACTATGGGAAGGAAGATCTAGACAATGCTGGTTAGCAGCAACACAAGCTGTTAACGCTTTAGATTCAGGTAATTTTTCTAACTATTGGGAAGGTGTTGGACATGTATACAAACCAAATGGTGGTGGTAACTACACTGGTTGTATTATGAGAAGCTCATATTATGGTGGTAATAATTGTGCTGACTGGAGAGTAAAAAGTGGCAACAGGTGGTGGATTAGAGATAGCACTCACTCAGAACCTAATGGTGATTACACCGCAAATGGTTTCCAAAGAATTTACAGTGGTAGTAGACCATCTGTAGGAAGTGTTAGTACTTCTATGGGATTTAATGATGGTGGTGCTTATGCAATTGGTAATTACTACCTCCTTTCAACTAACGCAAAAACATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
5fb5d5d417691cbefb663562fd7165a0534fdb5dda06a0e40d8bb039b67332e2
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5039
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50