Protein

View in Explore
Genbank accession
XCO38617.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MLNNLNQPKGSTIGVLRDGRTVQEAFDSLMYTEVLLKTGKENAESNRAALQAAADSTKLLAVPAGEYYLSSHVTLRTGNVIVGRGASAFSSGYTRLVCETPGEGIFWYTGDTSTGQKRMPQVYNMGLKGDYPIRFNDERTAIIADQAASNVPYGMVPVVQFCTIDPLTNGVGIGISASKMLDGVFSFNEIANFDTGVLLNGCDLMFVAHNRIRNAYRYMVLELGVGTFGSQNEIYHNDILHAGSTDCIFIKSTARHVRIYDNYLEQASGTSGQALIGFIDASAVDAPSFNGNAPAVRASTIIKDNRIDGQHFAKYFVYKYQPSSQTYGVIEDVSTVGPNTGLGANHLVLVDSSGNTVDRVPFLYNSVQTCSFRFSGPRFGKWNGYSSVSDFSLKLTGLNMSMWGTSLGGNSLKDYLSARGNSLILANGFTAAAVLQFPAGTLVRPSSQYAIKVTAKCSSGSETLTFAGVANGVGQTSVSMQLSTEPTSATTQFTSGSTQSGFSLGRSSNGADIEILAIEFIKLYSLEYSVVADTGATTVYRGSGDVVISASGNLQFPAYVVLRYIGGSLKEVYKSVTDAAVIDIAWSVSGQTLTVNITGSGGGKRFSVTQEEV
Physico‐chemical
properties
protein length:613 AA
molecular weight: 65341,58860 Da
isoelectric point:6,03360
aromaticity:0,09625
hydropathy:-0,01860

Domains

Domains [InterPro]
DC_0953
STR
1–392
DC_0953
IPR012334
STR
18–388
IPR012334
Coil
Unmapped
40–60
Coil DC_0556
IPR011050
STR
47–360
IPR011050
XCO38617.1
1 613
Architecture
STR
RBD
STR 1-392 | RBD 393-613
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XCO38617.1
1 613
Domain Start End Length (AA) Confidence
N-terminal 1 43 43 0,9576
Central domain 44 382 340 0,9881
C-terminal 383 613 230 0,9878
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-43
Central
44-382
C-terminal
383-613

Taxonomy

  Name Taxonomy ID Lineage
Phage Klebsiella phage phi1_146020
[NCBI] 		3232200 Viruses >
Host Klebsiella pneumoniae
[NCBI] 		573 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XCO38617.1 [NCBI]
Genbank nucleotide accession
PP889470.1 [NCBI]
CDS location
range 38069 -> 39910
strand +
CDS
ATGTTAAACAATCTGAATCAGCCGAAAGGCTCAACCATTGGTGTGCTCAGGGATGGGCGCACCGTCCAAGAGGCATTCGACTCACTGATGTACACAGAGGTCTTACTGAAGACTGGTAAGGAGAACGCTGAATCAAACAGGGCTGCCCTTCAGGCCGCAGCGGATTCCACTAAGTTACTGGCGGTACCGGCTGGTGAGTACTACCTATCGTCCCACGTAACCCTCCGCACTGGCAACGTCATAGTAGGACGCGGAGCCAGCGCATTCTCTTCAGGATACACACGGTTAGTGTGCGAGACTCCGGGTGAGGGCATATTCTGGTACACTGGCGACACCTCCACGGGGCAGAAGCGGATGCCTCAGGTGTACAACATGGGATTAAAGGGGGACTACCCGATTCGGTTCAATGATGAGCGTACGGCTATTATAGCAGACCAAGCTGCGTCTAACGTTCCGTATGGTATGGTTCCTGTCGTTCAGTTCTGTACAATCGACCCCTTAACTAACGGTGTTGGGATTGGCATATCTGCGTCTAAAATGCTTGATGGTGTGTTCTCTTTCAACGAAATTGCTAACTTCGACACAGGCGTTCTCCTCAATGGGTGCGACCTCATGTTCGTTGCCCATAACCGCATCCGTAACGCCTACAGGTACATGGTGCTGGAGCTTGGTGTCGGGACATTCGGTTCTCAGAACGAGATTTATCACAACGACATTCTTCACGCTGGGTCTACAGATTGTATCTTCATCAAATCAACGGCTCGACACGTTCGTATCTACGACAATTATCTGGAGCAGGCTTCAGGCACGAGTGGTCAGGCTCTCATTGGGTTCATTGACGCCTCGGCTGTCGATGCTCCGTCATTCAATGGGAATGCTCCGGCGGTTCGCGCCTCAACCATCATAAAGGACAACCGCATAGACGGGCAGCACTTCGCCAAGTATTTCGTGTACAAATATCAGCCATCGAGTCAGACATACGGTGTTATCGAGGATGTGTCTACGGTGGGTCCGAACACTGGCCTTGGCGCAAACCACTTGGTACTTGTGGACTCCTCCGGTAACACGGTCGACAGAGTACCCTTCCTGTACAACTCAGTGCAGACATGCTCCTTCCGCTTCTCTGGCCCAAGGTTCGGTAAGTGGAACGGGTATAGCTCTGTGAGTGACTTCTCACTTAAACTGACTGGTCTGAACATGTCAATGTGGGGCACGTCGTTAGGTGGTAACAGCCTCAAGGACTACCTGTCTGCGCGCGGTAACTCGCTGATTCTGGCAAACGGCTTCACGGCAGCGGCTGTTCTACAGTTCCCGGCAGGTACATTGGTTCGACCATCCTCACAGTATGCTATCAAGGTTACCGCGAAGTGTTCGTCTGGAAGTGAGACACTGACGTTTGCTGGTGTTGCTAACGGTGTTGGTCAGACAAGTGTGTCGATGCAGCTGAGCACCGAGCCAACGAGCGCCACAACCCAGTTCACATCCGGCTCCACTCAGAGTGGTTTCTCACTGGGACGCTCCAGCAACGGTGCGGACATTGAGATACTGGCTATTGAGTTTATCAAGCTGTACTCTCTGGAATACTCGGTGGTTGCTGACACAGGCGCGACTACGGTATACCGTGGGTCTGGAGACGTGGTTATTTCAGCCTCTGGAAACCTGCAATTCCCGGCGTACGTAGTTCTTCGGTACATTGGCGGAAGCCTCAAGGAAGTGTATAAGAGCGTCACTGATGCTGCCGTTATTGACATTGCGTGGTCCGTATCTGGCCAGACCCTTACCGTGAACATTACGGGGAGTGGTGGTGGTAAGCGGTTCTCCGTCACACAGGAGGAGGTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
4e32d6451d7b660449b3da9801b8a60c9325231c53c0dd197c8338431dc04af9
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6632
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The complete genome of Klebsiella pneumoniae phages Fang,Q., Luo,H., Feng,Y. and Zong,Z. 2016-02 — GenBank