Protein

View in Explore
Genbank accession
YP_008059815.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,81
Protein sequence
MDDPNYWGNALVWGEIIPNNDGGWAPGLSWGTQSTGGYPIRATWGLIPQGNNAWPFCSLRLRGDGNFFCNFQFQPASNDITTWSSSGNFIFQKAANSDRDLKHDIIYTDGKESYDRVMQWLPTMFKYNGSNIQRFGMIAQDLLKIDPEYVKLIPGGDIFADVIGVNDEGEEYVDRQIVVDKADDTLALDNNVIMADMACAMVYMGGMIENQQKEIDELKAAVAALLNK
Physico‐chemical
properties
protein length:228 AA
molecular weight: 25454,31860 Da
isoelectric point:4,31865
aromaticity:0,11404
hydropathy:-0,30921

Domains

Domains [InterPro]
DC_0195
STR
3–228
DC_0195
IPR030392
CHP
97–151
IPR030392 Coil
IPR030392
CHP
97–215
IPR030392
YP_008059815.1
1 228
Architecture
STR
STR 3-228
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Shigella phage pSf-1
[NCBI] 		2496551 Uroviricota > Caudoviricetes > Drexlerviridae > Hanrivervirus > Hanrivervirus pSf1
Host Shigella flexneri
[NCBI] 		623 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_008059815.1 [NCBI]
Genbank nucleotide accession
NC_021331.1 [NCBI]
CDS location
range 50899 -> 51585
strand -
CDS
ATGGATGATCCTAACTATTGGGGTAATGCTCTTGTTTGGGGCGAGATTATCCCTAACAATGACGGTGGATGGGCGCCTGGCCTTTCATGGGGTACACAATCAACTGGTGGTTATCCAATTCGTGCAACTTGGGGTCTTATCCCACAGGGAAATAATGCTTGGCCTTTTTGCTCATTAAGACTTCGTGGTGATGGTAATTTTTTCTGTAACTTCCAGTTTCAGCCAGCCTCAAACGATATAACCACATGGTCATCAAGTGGAAATTTCATTTTTCAAAAGGCCGCTAACTCTGACAGAGATTTGAAGCACGATATAATTTATACAGATGGAAAGGAAAGCTATGATCGCGTTATGCAGTGGCTTCCGACAATGTTTAAATACAATGGAAGCAACATTCAGCGATTTGGGATGATAGCTCAGGATCTGCTAAAAATAGATCCTGAATATGTAAAGCTAATACCTGGCGGGGACATTTTTGCAGATGTTATAGGCGTTAATGATGAAGGTGAAGAATATGTAGATCGTCAAATTGTGGTTGACAAAGCAGATGATACGCTTGCTCTTGACAACAACGTGATCATGGCTGATATGGCTTGCGCTATGGTTTACATGGGAGGAATGATCGAAAACCAGCAAAAGGAGATAGACGAATTAAAGGCGGCTGTTGCTGCACTGCTCAATAAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
10b57bcfaa702762408236b45d66d9a7435e39ed57ed956cd2f7a94dc803f59e
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8045
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50