Protein

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Genbank accession
GENB_5894d956005a [GenBank]
Protein name
tail spike protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MANEIGTATNFEDFFSKIIAFLTTNAALVSAGQAWQALRVRRDNIDTYTTSLPDSFTGNGRKQIHTFRYDPRSLNTNNPAQNGSESFWYTDSGFSAGSSYGQWKLRQAREVKTVRIKAPIGTSYASYAPKSFRLQYSDDGTAWTTALTVSNAPNWSAGERRDFAVPGTPGSHLYWKIIWDATQVVSYIGWQELLLLEADETVANHFGSEVILKALGNSGLDEIYTGIRAEYDSAAGWYNLFMNGYTGYDANEPSWFNQPGALPGYGAQYTRATPMVPLWNTTMPYWMVASGRSFRFCIKVGTNYEGGYLGFILPYATPNQYPYPLAVGGSLCPINDSARSAEWRYSYVSFAHGVYPGPGTQSYPESENLWATLYLRSPEGAWNYHGNRSVYASSNSEGVGGPTVSSSPPYNVGINNAGLRNVWPHCMNGQWSWGLRPYRECLGGGYILQPCVLIQRSPAQVLGELEGTFAISGYQNSAENTTVFNGKTHVVFQNAYRNTIHEHWALSMD
Physico‐chemical
properties
protein length:509 AA
molecular weight: 56464,95950 Da
isoelectric point:6,16421
aromaticity:0,14342
hydropathy:-0,39411

Domains

Domains [InterPro]
DC_0072
STR
1–509
DC_0072
G3DSA:2.60.120.260
STR
72–188
G3DSA:2.60.120.260
IPR008979
STR
82–152
IPR008979
PF22633
RBD
82–163
PF22633
GENB_5894d956005a
1 509
Architecture
STR
STR 1-509
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
GENB_5894d956005a
1 509
Domain Start End Length (AA) Confidence
N-terminal 1 38 38 0,1790
Central domain 39 237 200 0,6903
C-terminal 238 509 271 0,9749
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-38
Central
39-237
C-terminal
238-509

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage M6
[NCBI] 		2911432 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pseudomonas aeruginosa
[NCBI] 		287 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pseudomonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
DQ163916.1_CDS_[20913..22442] [NCBI]
Genbank nucleotide accession
DQ163916.1 [NCBI]
CDS location
range 20913 -> 22442
strand +
CDS

  




        

        
      
    
  






  

  
  

    
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Tertiary structure


  



  

    

      
        
          
            
              

                

                  

                    

                      
PDB ID

                      
f7516e65757bbeba0fff129a1e843ba9fea2acbc162bb06418b85d40424ec3b9

                    

                    
                      ESMFold
                    
                  

                  

                  

                    

                      Source
                      ESMFold
                    

                    

                      Method
                      ESMFold
                    

                    

                      Resolution
                      0,6499
                    

                    

                      Oligomeric State
                      monomer
                    

                    
                  

                  

                    
                      Download PDB
                    
                  

                  
                  
                  
                

                
                
                

                  

                    
                      
Model Confidence

                      

                        

                          

                          Very high
pLDDT > 90
                        

                        

                          

                          High
90 > pLDDT > 70
                        

                        

                          

                          Low
70 > pLDDT > 50
                        

                        

                          

                          Very low
pLDDT < 50