Protein

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Genbank accession
YP_006987233.1 [GenBank]
Protein name
colanic acid degradation
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MSDLSVVAERYLISESSVCHASDGQLLDDIKIVVHSDDSEWYVPTLPKGTLLKSLSLSSNVDGTCTCKLVHTNGSTDLVSATHISSNISGNTAIRQLPANDSRLIRFLSFEQYGAISGGTVECSAAINACLNDARKYNLPIWSTGKYYINNIVDFSNVTASGFTLVGGASSPNSYCVLVNGSANIDNVNFEKVYLQHTNGDLKLTNFTFKKVGATAAVLSLNLTSEGSVTLQYGTFRQCNYGYLRQGDPLWGSALRFQHLKNLQFFDMNGDCIELNLGIKDRNTEVSDILVDNVNHTGKNLFWGIALGFAGKTPYGLDADDSSYMSDVSIKRVKVYGARQCLHFEKCRNIYLEDIEMYPDSTKSVNSGIDPAGIILYGSKDISIKDVKGKPDQASIKMIHTSWGVTDDAYICAERNILVRDVDVDGNIELNMSTNDVYNSYLRVYNVSCNVFAITGQASEFHVENVRCSNILLDFQPVTNTSKDQLRRHNRITATFKDIVSKDENQDCVCSIKNIAIDELTVQNCNFPFFKQSTSTITRGTPITKLDGIYHYDSEGFPNGYQFKVGDRIIDSTGKMYVVKQSGAVFSSYEKVRSAVCGQNYLVSYNMNWLSAYKTAGTRIRIPGAGENGTDLVCTVVRSSHVNNGMYRIILSDTIKTDIPDGTQILPENICKY
Physico‐chemical
properties
protein length:673 AA
molecular weight: 74296,81400 Da
isoelectric point:5,84938
aromaticity:0,09064
hydropathy:-0,20921

Domains

Domains [InterPro]
DC_2249
ATT
18–238
DC_2249 IPR011050
IPR011050
STR
109–359
IPR011050 DC_0045
IPR023882
RBD
234–430
IPR023882
YP_006987233.1
1 673
Architecture
ATT
STR
RBD
ATT 18-238 | STR 239-524 | RBD 525-673
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_006987233.1
1 673
Domain Start End Length (AA) Confidence
N-terminal 1 122 122 0,9543
Central domain 123 549 428 0,9861
C-terminal 550 673 123 0,8937
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-122
Central
123-549
C-terminal
550-673

Taxonomy

  Name Taxonomy ID Lineage
Phage Cronobacter phage vB_CsaM_GAP32
[NCBI] 		1141136 Uroviricota > Caudoviricetes > Mimasvirus >
Host Cronobacter sakazakii
[NCBI] 		28141 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_006987233.1 [NCBI]
Genbank nucleotide accession
NC_019401 [NCBI]
CDS location
range 70351 -> 72372
strand +
CDS
ATGAGTGATCTTTCAGTAGTCGCGGAACGCTATTTAATTTCCGAAAGTTCAGTATGTCATGCATCTGATGGTCAATTACTTGATGATATTAAAATAGTAGTTCACTCTGATGATAGTGAGTGGTATGTTCCAACTTTACCAAAGGGAACATTATTAAAATCATTATCACTATCATCTAATGTTGATGGAACGTGTACTTGTAAATTGGTACATACGAATGGAAGTACTGATTTGGTTAGTGCTACGCACATATCAAGTAATATCTCAGGTAATACTGCAATACGTCAACTACCAGCTAATGATTCAAGGCTAATACGGTTTTTAAGCTTTGAACAATATGGTGCTATTTCTGGTGGTACAGTTGAATGTTCTGCCGCAATAAATGCATGTTTAAATGATGCACGAAAATATAATCTCCCAATATGGAGTACTGGAAAATACTATATTAATAATATAGTCGATTTTTCAAACGTCACTGCAAGTGGATTCACATTAGTTGGTGGGGCAAGTTCACCAAATTCATATTGTGTACTTGTAAATGGTTCTGCCAATATTGATAATGTAAACTTTGAAAAAGTTTATCTTCAGCATACGAATGGTGATTTGAAGTTAACCAATTTTACATTTAAAAAAGTTGGAGCTACCGCAGCAGTACTTTCATTGAATTTAACAAGTGAAGGTTCCGTAACACTCCAATATGGAACATTTAGACAATGTAACTACGGTTATTTACGTCAAGGTGATCCATTGTGGGGAAGTGCATTACGATTCCAACACTTGAAAAATCTACAGTTCTTTGATATGAACGGAGATTGTATTGAATTAAATTTGGGCATTAAAGATAGAAATACCGAAGTTTCTGATATCCTTGTTGACAACGTTAACCATACTGGTAAAAACCTTTTTTGGGGAATTGCACTAGGATTCGCAGGTAAAACTCCTTACGGTCTTGATGCTGACGATAGTTCATATATGTCAGATGTAAGTATTAAACGTGTCAAGGTGTATGGTGCTCGCCAATGTCTTCACTTCGAAAAATGTAGAAATATATACCTAGAAGATATTGAAATGTATCCAGACAGTACTAAGAGTGTTAACTCTGGTATTGATCCTGCTGGAATTATTCTTTACGGTTCAAAAGATATATCAATAAAGGACGTGAAAGGTAAACCTGATCAAGCTTCAATCAAAATGATTCACACGTCATGGGGCGTTACTGATGATGCATATATTTGTGCTGAACGTAATATTCTTGTCCGAGACGTTGATGTTGATGGAAACATTGAGTTGAATATGAGCACTAATGATGTATATAACTCATATCTAAGAGTTTACAATGTTAGTTGTAATGTATTTGCAATAACTGGACAAGCGTCAGAATTTCATGTTGAGAATGTAAGATGTTCTAATATACTTTTGGACTTCCAACCAGTAACTAATACCAGTAAAGACCAACTCAGAAGACACAACCGTATTACTGCAACATTCAAAGATATTGTCAGTAAAGATGAAAATCAAGATTGTGTATGTAGCATTAAAAATATTGCGATTGATGAATTAACAGTTCAGAACTGTAATTTTCCATTCTTTAAGCAAAGTACTTCTACCATTACACGTGGAACACCAATAACAAAACTCGACGGTATATATCACTATGATAGTGAAGGATTCCCAAATGGATACCAGTTCAAGGTTGGTGACAGAATTATAGATAGTACTGGAAAAATGTATGTTGTCAAACAATCTGGTGCTGTTTTCAGTTCATATGAGAAGGTTCGTTCTGCTGTATGTGGTCAGAATTATCTAGTTTCATATAATATGAACTGGTTGTCAGCATATAAAACTGCTGGCACTCGTATTCGCATTCCTGGTGCTGGAGAGAATGGAACAGACTTAGTGTGTACTGTAGTAAGAAGTTCACATGTCAATAATGGGATGTATAGAATTATATTATCCGACACAATTAAAACAGATATTCCAGATGGAACTCAAATACTTCCAGAGAATATATGTAAGTACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
2a6765fd23d196326c3c4abec2952e22f2e2b4c524127496078e2c1a15c686df
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7221
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50