Protein

View in Explore
Genbank accession
AXC43025.1 [GenBank]
Protein name
tail protein
RBP type
TF
Evidence RBPdetect2
Probability 0,72
Protein sequence
MPVIHVQKMPGTPKETGIVPAGTNLWKWLNKSNLPVSISIAVNGRVLGEDDELSFCLRDGDVVNVYCQPAGAIGDLIGAILKPVTKIFSFLTPKVSTPKTDTSSKISPNTSLKAQTNIARNGEARPDNFGQVRAFPDLLQESLFEYINNIKYVTEFMNFGLGKYDVSSVRYSESNLGSLAGAIYTIYQPGEVIPVVYEPYAFDDVDGQELYGPNELDTDPPPVVIETATTTTVTETEFAGGQIAVKIPKDSAFDYFVDLTMPHDVVFKLNITYAQGGGASVTENVTLSGRLVSATETDDGGLPPVNYWYTFIINSINYSGAPISSLSGVTINNTYFNLTDNQPIVSGPYFSPIDGDQLWVHLQHQTNDGNDFSVLIEWWKIDDDNVQIPGTYQSMNYYQDVDRNDTFYYTIKLTPSAGTGRYAIQMRRTNNSSDTSILQLEEIHSIVTRTNVSYPDDTVVKVTVRATENATGSRDRKYNALITRHTIGYNRDTGTVRYTLAPSRSFADAALHNWLITAGNPENTIDIVKLYEIADSLPDERLGCFDYTFDDEDKSIGERLQTICDAARVTAFWDDGVMSFSRDEKREYPATVFNTRNTQSDGYKLSYDISLPGTYDGVNVEYRDPTTNKQANVYYRITGSGIAEGEPTKAKKFDMLYVRNRYQAVDRAILECRRLIYSRRSMEIKALADGEWINVGDMIQVIDMYDDSQQTGVIEARNGNVFTTSEQLTADDNLYVVITSSDGSVSDRLPATVTGLHTFTCNLPSDFALNIWDGTNVQSESRYVLSTEKELDTTLWVVSQKNPGSDGTTTLTMSEYSDDMYEYVIPPS
Physico‐chemical
properties
protein length:828 AA
molecular weight: 92124,32270 Da
isoelectric point:4,54112
aromaticity:0,10145
hydropathy:-0,36703

Domains

Domains [InterPro]
DC_0118
STR
1–669
DC_0118 DC_0808
NF040662
Unmapped
356–822
NF040662
AXC43025.1
1 828
Architecture
STR
RBD
STR 1-669 | RBD 686-828
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage Skate
[NCBI] 		2234035 Uroviricota > Caudoviricetes > Skatevirus >
Host Salmonella typhimurium
[NCBI] 		90371 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AXC43025.1 [NCBI]
Genbank nucleotide accession
MH321493 [NCBI]
CDS location
range 30382 -> 32868
strand +
CDS
ATGCCAGTAATTCATGTTCAGAAGATGCCGGGCACACCGAAAGAAACGGGGATTGTGCCAGCTGGTACTAACCTGTGGAAGTGGCTTAATAAGTCAAATCTTCCTGTCAGCATTTCAATTGCGGTAAATGGCAGAGTGCTCGGTGAAGATGATGAGCTTTCTTTCTGCCTGCGTGATGGCGATGTGGTCAACGTTTATTGCCAGCCAGCAGGCGCAATTGGCGACCTAATCGGTGCGATACTGAAACCAGTAACGAAGATTTTCTCCTTCCTTACACCGAAAGTATCCACGCCGAAAACGGATACCAGTTCAAAAATATCACCTAACACCAGCCTGAAAGCGCAAACCAACATTGCGCGCAACGGTGAGGCGCGACCTGATAACTTCGGGCAGGTTCGCGCATTCCCTGACTTGCTTCAGGAATCATTGTTTGAATACATCAATAATATTAAATATGTCACCGAGTTCATGAACTTTGGACTCGGTAAATATGATGTTTCCTCTGTGCGTTACTCGGAATCAAACCTCGGTTCACTGGCTGGAGCGATTTACACCATTTATCAGCCCGGAGAAGTTATTCCTGTTGTGTATGAACCATACGCATTTGATGATGTTGATGGTCAGGAGTTATACGGGCCAAACGAACTTGATACCGACCCTCCACCAGTAGTCATTGAAACGGCAACAACCACCACAGTCACAGAGACAGAATTTGCTGGAGGTCAGATTGCCGTTAAGATACCGAAGGATTCAGCATTCGATTACTTTGTTGACCTAACAATGCCGCATGATGTGGTATTTAAGCTGAATATCACTTACGCACAAGGTGGCGGCGCATCTGTAACTGAAAACGTCACGCTATCAGGAAGACTTGTATCCGCAACAGAAACTGACGATGGCGGGCTGCCACCAGTAAACTACTGGTACACGTTTATTATTAACAGCATCAACTACTCAGGTGCGCCAATATCATCACTGAGCGGCGTGACGATTAATAACACCTATTTCAACCTGACAGATAACCAGCCTATTGTTTCTGGCCCGTACTTTTCACCGATTGATGGTGATCAGCTTTGGGTGCACCTGCAACACCAGACAAATGACGGCAATGATTTCAGCGTGCTCATTGAGTGGTGGAAGATTGACGACGATAACGTTCAGATTCCCGGAACGTATCAGTCGATGAACTATTATCAGGACGTGGACAGAAACGATACGTTCTACTACACGATCAAGTTAACGCCATCCGCTGGCACCGGTCGCTATGCGATTCAGATGCGAAGGACAAACAACAGTTCCGACACATCAATTCTTCAGCTTGAGGAAATTCACTCAATAGTCACTCGCACCAACGTTTCGTATCCAGATGACACCGTGGTTAAAGTTACCGTGCGTGCAACGGAGAACGCAACAGGCAGCCGTGACAGGAAATATAATGCGCTAATCACGCGCCACACCATCGGATACAACCGTGATACTGGAACGGTGCGCTACACGCTTGCACCTTCCCGTAGCTTTGCAGATGCAGCGCTGCATAACTGGCTTATTACCGCTGGCAATCCAGAAAACACGATCGACATAGTGAAGCTGTATGAAATTGCCGACAGCCTGCCTGATGAGCGACTTGGTTGTTTCGACTATACATTCGATGATGAAGATAAAAGTATTGGCGAACGCCTGCAAACAATCTGCGACGCAGCACGAGTCACCGCATTCTGGGATGATGGCGTGATGAGCTTTTCGCGTGATGAGAAACGAGAATATCCAGCAACAGTATTTAACACCAGAAACACGCAGAGCGACGGATACAAGTTAAGTTATGACATCAGTCTTCCCGGCACTTATGATGGTGTTAACGTCGAATATCGCGACCCAACAACGAACAAGCAAGCCAACGTTTACTATCGCATTACAGGCAGCGGAATAGCAGAAGGTGAGCCAACTAAAGCGAAGAAGTTCGACATGCTTTATGTTCGCAATCGCTATCAGGCTGTTGACAGGGCAATACTTGAATGTCGCAGGCTGATTTACTCACGTCGCAGCATGGAAATTAAAGCGCTGGCAGATGGCGAATGGATTAATGTAGGGGATATGATTCAGGTAATTGATATGTATGATGACTCGCAACAGACTGGCGTTATTGAAGCGCGCAACGGGAACGTATTCACAACCAGCGAGCAGCTTACGGCAGATGACAATCTCTACGTTGTGATTACCAGTTCTGACGGCAGCGTGTCAGACAGACTTCCAGCTACGGTAACCGGATTGCATACATTCACCTGCAACCTGCCATCTGATTTCGCGTTGAATATTTGGGATGGCACTAATGTTCAAAGTGAATCACGTTACGTGCTGAGTACGGAGAAAGAACTGGATACCACGCTGTGGGTTGTCAGCCAGAAGAATCCCGGTAGTGACGGAACGACAACACTGACGATGAGTGAATACAGCGACGACATGTACGAATATGTCATCCCACCATCGTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
86c8d3def03fb25bc29cdbe7db5d78e8df143e63e20cc811d190c4da079cd5ae
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2909
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete Genome Sequence of Salmonella enterica Serovar Typhimurium Siphophage Skate Rohren,M., Xie,Y., O'Leary,C., Kongari,R., Gill,J. and Liu,M. 2019 31270198 GenBank