Protein

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Genbank accession
YP_008853802.1 [GenBank]
Protein name
bacteriolytic protein
RBP type
TSP
Evidence UniProt/TrEMBL
Probability 1,00
TSP
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MGNMVLNPIAFFTDLTGKPLQGGHVYIGVANANPVTNQLTVYQDAAMTIPMSQPLSTSNGYVTLNGTPQPVFVNAASYSLAVNDSAGNLTLSLPNYTNPLLNQTGAGGASQIGFDGTTLDQQFLSRVGRVVDSIAVLRALSKTTYTRAFVTGYYAAGDGGGGAYWYDPTDTSSADNGGTIIVATDGGRWKLIITTSFVSAKQFGAKIDGVTDDSTVINNAKAPLDALGKRLYFPAGICKIGTAIMPPLAGVFGDSPQSSVILCNGVSAFNFPSTFGLGRPACVIEKLGIKSYNNTCDGLFAFNAPGVASGAAVVYNSGLTVRDVEIGTGGRFGGAFSLKDFFRVNIENVGCTDVSQVINLAGSVVQCTFRNITANGDNAPTILQRTGLSTTAATYSSGLLGPEHISCWDCSFIRFNIGVNHQAGLMIDFNQMDMETFQYGFYLKAACNINGGIINPAPNSAGTAAWIGVFKDVPDFETTNGAIIDGLDVNALNVPGTPGSSYGMVIGNGVNKCVGTTIKNCRFRGAASSFLSAISAPLMGGEIILENNQVSGTVATGTTFSVTGASYARVVGNRCATGGTVNGSMSVTDNGTGSIGIVLGNEFATITNTVNSYSGAWNPGTIANSTPASTTVAVPGAVAGDRVIAGLSSLIGSANCMITGYVSSSNNVTVIIYNVSGGSQTIPSGTLNVAVLKP
Physico‐chemical
properties
protein length:694 AA
molecular weight: 71283,45990 Da
isoelectric point:5,32805
aromaticity:0,08213
hydropathy:0,19092

Domains

Domains [InterPro]
IPR036730
ATT
1–99
IPR036730 IPR012334
IPR036730
ATT
4–95
IPR036730 IPR011050
IPR009093
ATT
7–94
IPR009093
DC_0706
STR
56–694
DC_0706
YP_008853802.1
1 694
Architecture
ATT
STR
ATT 1-99 | STR 100-694
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_008853802.1
1 694
Domain Start End Length (AA) Confidence
N-terminal 1 212 212 0,9926
Central domain 213 603 392 0,9964
C-terminal 604 694 90 0,9883
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-212
Central
213-603
C-terminal
604-694

Taxonomy

  Name Taxonomy ID Lineage
Phage Ralstonia phage RSK1
[NCBI] 		1417599 Uroviricota > Caudoviricetes > Firingavirus >
Host Ralstonia solanacearum
[NCBI] 		305 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Betaproteobacteria > Burkholderiales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_008853802.1 [NCBI]
Genbank nucleotide accession
NC_022915 [NCBI]
CDS location
range 18351 -> 20435
strand +
CDS
ATGGGAAACATGGTTCTCAATCCCATCGCATTCTTCACTGATCTGACGGGTAAACCGCTGCAGGGCGGCCACGTCTACATCGGGGTTGCGAATGCCAACCCGGTGACGAACCAGCTGACGGTCTATCAAGACGCTGCGATGACGATCCCCATGTCGCAGCCGCTCTCAACCTCCAACGGATATGTCACGCTCAACGGGACGCCACAACCGGTGTTCGTGAATGCTGCCTCGTATTCGTTGGCGGTGAACGATTCAGCCGGAAATCTGACACTCTCGTTGCCGAACTACACGAATCCGCTGCTCAACCAGACCGGGGCCGGGGGTGCCAGTCAAATCGGTTTCGATGGGACGACCCTCGACCAGCAATTTCTCAGTCGCGTCGGGCGTGTCGTGGATAGCATTGCAGTTCTGCGTGCGCTCTCGAAAACAACCTATACCCGCGCATTCGTCACAGGCTATTACGCCGCAGGTGATGGCGGCGGTGGCGCGTACTGGTATGACCCGACCGATACGAGCAGCGCCGACAATGGCGGCACTATCATCGTTGCCACCGATGGTGGCCGCTGGAAATTGATCATCACGACGAGCTTCGTGTCGGCCAAACAATTCGGCGCCAAGATTGACGGCGTGACGGACGACAGCACAGTCATCAACAATGCCAAGGCGCCGCTGGACGCGCTCGGTAAGCGGCTCTATTTCCCAGCCGGCATCTGCAAAATTGGCACGGCGATCATGCCGCCGCTTGCCGGTGTATTCGGCGACAGTCCGCAATCCTCCGTCATTCTCTGCAATGGTGTTTCAGCGTTTAATTTCCCTAGCACGTTCGGCCTTGGGCGGCCGGCCTGTGTGATCGAAAAGCTCGGTATCAAGTCGTACAACAATACGTGCGACGGTCTGTTCGCATTCAATGCTCCAGGCGTCGCGTCAGGCGCAGCTGTTGTCTACAACAGCGGCCTGACAGTACGCGATGTGGAGATCGGCACAGGCGGCCGTTTTGGTGGCGCATTCAGTCTGAAAGACTTCTTCCGCGTTAATATTGAGAATGTAGGCTGCACCGATGTAAGCCAGGTGATTAACCTGGCGGGCTCTGTGGTTCAATGCACTTTCCGCAATATTACGGCGAATGGTGACAATGCCCCTACGATTCTACAGCGCACTGGTCTCAGCACAACAGCAGCAACCTATTCGAGCGGATTGCTAGGGCCTGAGCATATCAGTTGCTGGGACTGTAGTTTCATCCGATTCAATATCGGTGTTAACCACCAGGCTGGATTGATGATCGATTTCAACCAGATGGATATGGAGACGTTCCAATATGGGTTCTATCTGAAAGCGGCTTGCAATATCAATGGTGGTATTATCAATCCGGCTCCTAATTCTGCCGGAACTGCCGCATGGATCGGTGTTTTCAAGGATGTACCGGATTTCGAGACTACCAACGGCGCGATCATAGATGGGCTAGATGTGAACGCGCTGAATGTGCCCGGCACACCAGGATCGTCCTATGGCATGGTCATCGGTAACGGCGTTAATAAGTGTGTCGGCACCACTATCAAGAACTGCCGATTTCGCGGGGCCGCCTCGTCCTTCCTGAGTGCCATTAGCGCGCCGCTGATGGGCGGCGAAATCATCTTAGAGAACAACCAAGTCAGTGGCACTGTGGCCACCGGCACGACATTTTCTGTTACCGGCGCATCCTACGCTCGCGTGGTTGGAAATCGCTGCGCTACAGGCGGCACGGTCAATGGTTCTATGTCTGTCACTGACAACGGCACTGGCTCGATTGGCATCGTACTTGGCAATGAGTTTGCGACGATAACCAATACCGTTAATTCGTATTCCGGCGCGTGGAACCCAGGGACGATTGCGAACTCCACGCCAGCCAGCACGACTGTTGCGGTGCCTGGTGCAGTCGCGGGTGATAGGGTGATCGCGGGGCTTTCAAGTCTGATCGGCAGCGCGAACTGCATGATCACGGGCTACGTGTCATCCAGCAATAACGTCACCGTCATCATCTACAACGTGTCGGGCGGCTCGCAGACGATCCCGTCTGGCACGCTGAATGTCGCGGTGCTCAAACCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
e7ce52876203a43410a1d0a947d441f7790a1d153242605e2f9aafc113187278
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8179
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Dynamic genome rearrangements of T7-like phages that infect Ralstonia solanacearum Kotera,S., Fujiwara,A., Kawasaki,T., Fujie,M. and Yamada,T. 2015-02-13 — GenBank