Protein

View in Explore
Genbank accession
QDH84230.1 [GenBank]
Protein name
central tail fiber J
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,58
Protein sequence
MATLLLIENAFRPDANPRQEPVRAGERISSMLRRIGYLKGRGAKAVRKVPFIVVRNGEPVLIAQMSTRIKAKDHISVIHLPKGGGGGSNPLQMVLTVAIAVAAAYTGGLAATAFGSQLAGAAVSAAVMIGGTLLLNMFFPPQMPSAMSLNREKASPTYSISSQGNQARLMEAIPVLYGRFRTFPDLASAPYTESRGNETYLYQLFCITQGQMDIETIQVENDNVSTYGEIEYQIVNPGQSVTLFPDNVISSPAVNNFELTAPDEPGNIKGPFAVSNPGVQVNYVGIDLYLPGGAYRMNDKGRFETSKVNVKFEYQTINDAGVPTGPWQLLFEKEYAFATNTPQSISEKVEVPLARYQVRGYRTSDKPNDNREINTIQWAVMRGYAPSVRQYGDVTLLAMIIKATNNINQQTSRRINVIGTRKLPVWDPVNGWSVNPVATTNPAWAAADMLRNTTYGRRLPTSRINIQELHRLSQVYQARGDEFNGVFDTTSQLWDALTKVLRVGRTVPINYAGLIDFVRNEPKTVPTYMFQPQNMVENSFSTEYAFAEPGSTPNYVQVEYINRETWVSETVDCVLPGVAPTIPAKVQLMGVTSRAQAWREGMSLAAANRDQRRQISFSTGFEGYLPRFGDLVQISHDVPQWGYSGEVLGLNAGPDSEEYGLQGELTTTEELVFVPGLTHQIAFKKRDGSPHGPFNVVPHPSGLYNKAIVQATVAQLQQIYISDGFREELTQYQFGPTERRGLRAIALSATPDSDGKVLLTFTNYAESVHAAENGGVTPPPGPDSNLPGIVTVPIIDSVKLELTPYAWQQLIVATPARGARLYEYEISQDGLNWSNLGTATSPSMQVNLSGGTWFVRVRAIGNLTGPWTTWTGVVEASTLPASRVDHVSITSVVFGIDLEWAVREDDYLAASVEVYWGTTNVLGNATRLIDMPLPGNKFSVTDLGPGAVRYFWFRAIDEAGRVGPWYNNGVGLMGKSSDQADIIMAYLDGKITETQLAQSLIEKIDSGGGAAVEVEAIQSALAAMYTIKTQLTAGGRTALAGIGVGVENNAGVLESQVLVLADRFAVGRADDATGTFKSMFIIDNGNVYIDTAFIKNGTITNAMIGNVLQSNNYVPGVSGWRIDKATNTIEINSPLPGGGRLTIDSQAVVVYDPNGIDRARFGWIP
Physico‐chemical
properties
protein length:1165 AA
molecular weight: 126833,95530 Da
isoelectric point:5,51312
aromaticity:0,08927
hydropathy:-0,15468

Domains

Domains [InterPro]
DC_0129
STR
1–1116
DC_0129 DC_2243
IPR055385
ATT
280–382
IPR055385 IPR032876 IPR015406
NF040662
Unmapped
280–770
NF040662 IPR053171
QDH84230.1
1 1165
Architecture
STR
ATT
STR
ATT
STR
RBD
STR 1-279 | ATT 280-382 | STR 383-492 | ATT 493-641 | STR 642-1116 | RBD 1117-1164 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QDH84230.1
1 1165
Domain Start End Length (AA) Confidence
N-terminal 1 647 647 0,8237
Central domain 648 1113 467 0,0445
C-terminal 1114 1165 51 0,6062
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-647
Central
648-1113
C-terminal
1114-1165

Taxonomy

  Name Taxonomy ID Lineage
Phage Achromobacter phage vB_AxyS_19-32_Axy14
[NCBI] 		2591050 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QDH84230.1 [NCBI]
Genbank nucleotide accession
MK962633.1 [NCBI]
CDS location
range 21044 -> 24541
strand +
CDS
ATGGCAACCCTGCTGCTGATTGAAAACGCTTTCCGCCCAGACGCGAATCCCCGGCAAGAGCCGGTTCGCGCCGGCGAGCGTATCAGCTCCATGCTGCGCCGTATCGGCTACCTGAAGGGCCGCGGTGCGAAAGCGGTGCGTAAAGTCCCGTTTATCGTCGTTCGAAACGGCGAACCGGTCCTTATTGCTCAAATGTCTACGCGCATTAAGGCTAAGGACCACATCAGCGTCATCCACCTGCCAAAGGGCGGTGGTGGCGGGAGCAACCCGCTTCAAATGGTGTTGACGGTGGCTATTGCTGTCGCGGCCGCCTATACTGGTGGCTTGGCTGCTACAGCTTTTGGCTCTCAACTGGCAGGCGCGGCAGTATCGGCTGCGGTCATGATTGGCGGCACTTTGCTGCTGAACATGTTCTTCCCACCACAAATGCCGTCAGCCATGTCCTTGAATCGAGAGAAGGCGAGTCCAACGTACTCGATTTCCTCTCAAGGCAACCAGGCTCGGCTTATGGAAGCTATCCCGGTTCTGTACGGTCGCTTCCGCACCTTCCCCGACCTCGCTTCGGCTCCTTATACCGAGTCGCGAGGCAACGAGACTTACCTGTACCAGCTCTTCTGCATCACGCAAGGACAAATGGACATCGAGACCATCCAGGTCGAGAACGACAATGTGTCCACGTACGGGGAAATCGAGTACCAGATTGTCAATCCTGGGCAGTCTGTTACCCTGTTCCCGGACAACGTCATTTCCAGCCCAGCCGTCAACAACTTTGAGCTTACTGCTCCAGATGAACCGGGCAATATTAAGGGGCCTTTTGCTGTCTCGAACCCTGGCGTCCAAGTTAACTACGTTGGTATTGACCTGTATTTGCCTGGCGGCGCATACCGCATGAATGATAAGGGCCGATTCGAGACTTCCAAAGTCAATGTGAAGTTTGAATATCAAACTATCAATGACGCGGGCGTTCCTACCGGTCCTTGGCAACTTCTTTTTGAGAAAGAATACGCCTTTGCCACCAATACTCCTCAGAGCATTTCTGAGAAAGTTGAGGTTCCGCTTGCTCGGTACCAAGTACGAGGCTATCGGACTAGTGACAAGCCGAATGACAACCGTGAAATCAATACGATTCAATGGGCTGTCATGCGCGGCTATGCTCCGTCGGTCCGCCAGTACGGTGACGTGACTTTGCTGGCTATGATTATCAAGGCCACGAACAACATCAACCAGCAAACCTCTCGCCGTATCAATGTGATTGGCACGCGTAAGCTGCCGGTGTGGGACCCTGTCAATGGCTGGTCTGTCAACCCAGTTGCTACGACCAACCCCGCTTGGGCAGCTGCAGACATGCTGCGCAATACGACCTATGGCCGGCGCTTGCCAACTTCCCGTATCAACATTCAAGAGCTGCACCGCCTCTCGCAGGTCTATCAGGCTCGTGGTGACGAGTTCAATGGCGTCTTTGATACCACTTCTCAGCTGTGGGATGCGCTGACGAAAGTCTTGCGGGTGGGTCGGACTGTTCCGATCAACTACGCGGGCCTCATTGACTTTGTGCGCAACGAGCCCAAGACAGTTCCAACCTACATGTTCCAGCCTCAGAACATGGTGGAGAACTCGTTCAGCACTGAATACGCCTTTGCGGAACCGGGCTCTACTCCGAACTATGTTCAAGTTGAGTATATCAACCGTGAAACTTGGGTGTCTGAGACTGTCGACTGCGTGCTACCAGGCGTCGCGCCCACGATTCCGGCAAAGGTGCAGCTCATGGGCGTCACTAGCCGTGCTCAAGCATGGCGTGAAGGCATGTCCTTGGCCGCCGCCAACCGCGATCAGCGCCGTCAAATCAGCTTTTCGACAGGCTTTGAGGGCTATTTGCCTCGCTTCGGCGACCTCGTCCAGATTTCTCACGACGTTCCTCAATGGGGATACTCTGGTGAAGTCTTGGGCTTGAACGCCGGACCGGACAGCGAAGAGTATGGCCTGCAGGGTGAACTGACCACCACGGAAGAGCTTGTATTTGTTCCCGGACTGACCCACCAAATCGCGTTCAAGAAGCGCGATGGGTCGCCGCATGGCCCCTTCAACGTTGTACCGCATCCCTCCGGTCTGTACAACAAGGCCATCGTCCAAGCCACTGTCGCCCAGCTGCAGCAAATCTACATTTCGGACGGTTTTCGGGAGGAGCTGACGCAGTATCAATTCGGTCCTACCGAACGCCGTGGGCTGCGCGCAATCGCGTTGTCGGCTACTCCGGACAGCGACGGAAAAGTGCTGCTGACGTTCACGAACTACGCAGAGAGTGTCCATGCTGCTGAAAACGGGGGTGTTACTCCACCTCCTGGCCCAGACTCGAATCTCCCGGGTATCGTCACGGTGCCCATCATTGATTCAGTCAAGCTGGAGCTGACTCCGTACGCTTGGCAGCAGCTGATCGTGGCTACGCCTGCTCGTGGTGCCCGCTTGTATGAATATGAGATTAGCCAGGATGGCCTCAATTGGTCCAACCTTGGTACGGCTACGTCTCCTTCGATGCAAGTCAACCTCAGTGGTGGCACTTGGTTTGTCCGAGTGCGTGCTATCGGCAACCTGACTGGCCCTTGGACTACTTGGACGGGTGTCGTTGAGGCGTCTACGCTTCCAGCCTCCCGCGTAGACCACGTTTCCATTACGTCTGTTGTGTTTGGTATAGACCTCGAATGGGCCGTGCGTGAAGACGACTATCTGGCTGCGTCCGTTGAAGTGTACTGGGGAACTACCAACGTGCTCGGCAATGCCACCAGGCTTATTGACATGCCGCTACCAGGGAATAAATTCTCTGTCACGGACCTCGGGCCTGGTGCTGTTCGGTACTTCTGGTTCCGAGCGATTGACGAAGCAGGGCGCGTCGGTCCTTGGTACAACAACGGGGTGGGTCTGATGGGTAAGTCCAGCGATCAAGCTGACATCATCATGGCTTATCTGGACGGCAAAATCACTGAGACCCAACTGGCTCAGTCCCTTATCGAGAAGATCGATTCTGGTGGCGGAGCAGCGGTCGAGGTGGAAGCAATCCAAAGCGCCTTGGCTGCAATGTACACCATCAAAACGCAGCTGACGGCTGGTGGCCGTACTGCTCTTGCTGGTATCGGCGTGGGTGTCGAAAACAACGCCGGCGTGCTAGAATCACAAGTACTTGTGTTGGCAGACCGATTTGCGGTGGGTCGTGCTGATGATGCGACTGGTACTTTCAAGTCCATGTTCATCATCGACAACGGCAACGTGTATATCGATACCGCCTTCATCAAGAACGGCACCATTACAAACGCAATGATTGGAAACGTGCTTCAATCCAATAATTATGTTCCTGGTGTTTCTGGCTGGCGTATTGATAAAGCTACCAACACCATTGAAATTAACAGCCCGCTGCCCGGAGGCGGACGTCTTACTATCGACTCTCAAGCGGTAGTTGTGTACGACCCCAATGGGATTGACCGGGCACGCTTTGGATGGATTCCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
6c4b2735b35545197ee0275ea59be763b38296a8d64ee06112b0ac3351beaa84
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2774
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of sixteen phages from Abidjan, cote d'Ivoire, isolated on a single strain of Achromobacter xylosoxidans Essoh,C., Vernadet,J.-P., Vergnaud,G. and Pourcel,C. 2020-01-02 — GenBank