Protein

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Genbank accession
ARB06263.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MAINPETQYPGKIAPSSADYPYGSARNVTVPGDGTGTPWEAAIVKDWMGFFQKILVEGGVVPSGAPDTVNASDYWNASFGRLATVVGASLVGTQQNETVQQALVSRAVRFDTVADMLAAVWLDSLADGAYVTTLSEALPVVAVWRVTSSDPGTGRVLQNTAGTSVAYLQLQEDQHTGPEAYGYDGTVGTSAAFISWAQAQARKFTGAFLLNAGAPTVLNAAGRSSYEGLEINGAVIQRRGYPSGKACIIPDVFPLKLPFGVRAVSTGLCDHDFDPNTYDIERTAPAPTYVYVDNINGDNLDTGLTPADPVRSINKGLDIINAGGPYANAVLLIRPGYYRDKDSWSGRSVQSNVSVKPWITSDDPRRGPVISATDNPTLSWSLESGAVWQTARSGAAWVVDTEQRNAQGDWHDLTKVNTLQDCRDNAGTWYTDNVDVYVHRVDGSTVTSPEVRVYTSRANGSAEDGAYTLYLEDIHFYGGTKAWKTDSRPNGTAETIVFNRCKTLYSSGNGFEHYGADLVISIDCVADYNLADGFNYHANRADLLQVTRSIEVNCRAKENGREWSPIIDVNNGSTAHEQHVIIRCGTIVTRNQGPQFADVGDAKSYNFNCSGSYCTRNGDTARKTDFLHSGSGGTGQGEMYLDLCDGHNSLYSLDITNGSAAYLEDCSFDLRIEGVEALQPIPR
Physico‐chemical
properties
protein length:683 AA
molecular weight: 73655,40350 Da
isoelectric point:4,80292
aromaticity:0,09370
hydropathy:-0,32225

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
ARB06263.1
1 683
Domain Start End Length (AA) Confidence
N-terminal 1 190 190 0,9921
Central domain 191 399 210 0,9050
C-terminal 400 683 283 0,0564
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-190
Central
191-399
C-terminal
400-683

Taxonomy

  Name Taxonomy ID Lineage
Phage Shewanella phage SppYZU01
[NCBI] 		1965372 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ARB06263.1 [NCBI]
Genbank nucleotide accession
KY622015 [NCBI]
CDS location
range 23858 -> 25909
strand +
CDS
ATGGCAATTAATCCAGAAACACAATACCCCGGCAAAATAGCCCCGAGCAGCGCCGATTACCCCTACGGGTCTGCTAGAAATGTAACAGTACCGGGAGACGGAACGGGAACCCCTTGGGAGGCGGCCATCGTTAAAGACTGGATGGGGTTTTTTCAAAAGATACTCGTCGAGGGTGGAGTTGTCCCGAGCGGGGCCCCCGACACGGTTAACGCGTCGGATTATTGGAACGCTAGTTTCGGCCGACTGGCGACGGTCGTAGGCGCGTCCCTAGTTGGGACCCAGCAAAACGAAACGGTGCAGCAGGCGTTAGTATCGCGCGCGGTGCGGTTCGACACTGTGGCGGATATGCTCGCCGCCGTGTGGCTGGATTCATTGGCCGACGGCGCATATGTAACCACGCTGTCGGAGGCGCTCCCGGTGGTTGCCGTGTGGCGTGTTACCTCAAGCGACCCTGGGACGGGGCGGGTACTGCAAAACACGGCGGGTACGTCTGTCGCATATTTGCAGCTACAAGAAGACCAGCACACCGGGCCGGAGGCGTACGGATATGATGGTACGGTTGGAACGTCGGCCGCTTTTATATCGTGGGCTCAGGCGCAGGCGCGCAAGTTTACCGGCGCATTTTTACTAAACGCTGGCGCGCCCACTGTGCTGAACGCGGCAGGCCGTAGCAGTTACGAAGGGCTTGAAATTAACGGCGCGGTAATACAGCGCCGTGGGTACCCGTCGGGTAAGGCTTGCATTATCCCGGACGTGTTCCCGTTAAAACTACCGTTTGGCGTCCGAGCGGTATCTACAGGCCTTTGCGACCACGACTTCGACCCCAACACGTACGACATAGAACGCACGGCCCCCGCGCCGACTTATGTTTATGTAGATAACATAAACGGGGACAATCTCGACACAGGTCTAACACCGGCTGACCCCGTCCGGTCCATAAATAAAGGGTTGGATATAATAAACGCAGGGGGCCCTTACGCTAACGCCGTGTTGCTTATCCGCCCCGGGTACTACAGGGATAAAGACTCATGGTCGGGCCGCAGTGTACAGAGTAACGTATCCGTAAAACCTTGGATTACGTCCGACGACCCGCGGCGGGGCCCTGTCATTTCGGCAACCGACAACCCCACGCTATCGTGGTCGTTAGAGAGCGGCGCAGTGTGGCAAACCGCCCGGTCGGGGGCCGCGTGGGTCGTTGACACAGAGCAACGGAACGCACAAGGCGACTGGCACGACTTAACTAAAGTTAACACGTTGCAAGATTGCCGCGACAACGCGGGGACATGGTATACCGATAACGTCGACGTGTACGTCCACAGGGTGGACGGCTCGACCGTTACTAGTCCAGAGGTCCGTGTATATACGTCTAGAGCTAACGGGTCCGCCGAAGACGGGGCGTACACTCTGTACCTAGAAGACATACATTTTTATGGCGGTACGAAGGCGTGGAAAACCGACAGCCGACCAAACGGCACCGCCGAAACGATAGTCTTTAACCGTTGTAAAACTCTATATTCATCTGGTAATGGATTCGAACATTACGGGGCGGATTTAGTAATTAGTATTGATTGCGTCGCAGATTATAATTTAGCTGACGGCTTTAATTATCACGCAAACCGTGCGGACTTACTGCAAGTTACGCGCTCAATTGAGGTAAACTGTCGTGCTAAAGAAAATGGTCGCGAATGGTCGCCTATTATAGATGTTAATAACGGGTCAACCGCGCACGAGCAGCACGTTATCATACGCTGTGGCACCATAGTCACCCGAAACCAAGGCCCACAGTTTGCCGACGTTGGCGACGCCAAGTCGTATAACTTTAATTGTTCTGGGAGTTACTGCACCCGTAACGGTGACACGGCGAGAAAAACGGACTTCCTACACTCAGGGAGTGGCGGCACGGGTCAAGGGGAAATGTACCTTGATTTATGTGACGGGCATAACTCACTTTACAGCCTAGACATAACCAACGGCTCGGCCGCGTATCTTGAGGATTGCTCGTTCGACCTCAGAATAGAAGGCGTGGAAGCCTTGCAACCGATACCGAGGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
f9b10fad80ca12a29505b6372a9a95857c199de54ef2bbdda4151f39e5dd32fd
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6961
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation of lytic bacteriophages infecting Shewanella putrefaciens and Shewanella baltica for biocontrol of fish and shrimp spoilage during chilled storage Yang,Z., Tao,X., Gao,L. and Rao,S. 2019-03 — GenBank