Protein

View in Explore
Genbank accession
AUR85675.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MSSNLIKQPYEMILDPTGGGGRAKPVANGKFYVGEIDKDPIANPRTDIVYRDESGQERPLASPLTLNNSGAFVVSKNDGTIILPYMKDGIGFSVLIQDARGRDVYSDLNTGDPGNIVEAISEYSDIVFKASGGNSAVENMIDEFNINPLMYAIGTITKTGGTTFGYIDSTGPITIDNFRAFNAIHISDFTDGSGADERVNIQSALDAAEGGRLVFESKTYNVSFDGIYGVRVPSNITIDGNNATIQCEATSLTNYGIVFLYKKENVVINNLHVVGDVETHTGTTGEAGYGFEVRSCKEVTLNNCSSSKCWGDGLLLGSDSISTNEGVYINHCVFDSNRRQGSSVGGGVRVVYTGCTFKNTGSILSTAPSAGIDIEPDTNKIADLDVKLVNCNSENNKGGAIHVILSGCLNAPTLEPGACQVNVNIVNFTSTGDDSYNTTEGRAAIRFGGTKATYPDPSNGNKLQGGVNFTNVTISNPATSAVWLTNPISAYPPLKFNNLTVTDVFSGVPVGSSMPTGNIIYFDIFEGVGISPAFEIGDIDFIGLTYRDTRGLTYSSTATESNHRVTRPVWHKNLESTTSLKSVRFRHFKTEIQPATLNFLMNGYRGDECSFDRDAMFVDRDASITASETNGRWGLGIVPVIGEPGTTALIVEMPTTEDRQGTYQVIRSYRDAPKTGQRLVFRTCSVSGFTEEILYKDGTRTSAQTEPAQSLGEFVFFCPKQGLWVEM
Physico‐chemical
properties
protein length:727 AA
molecular weight: 78346,42530 Da
isoelectric point:4,85583
aromaticity:0,08803
hydropathy:-0,22834

Domains

Domains [InterPro]
IPR036730
ATT
2–113
IPR036730 IPR012334
IPR036730
ATT
2–105
IPR036730 DC_0090
IPR036730
ATT
23–103
IPR036730 IPR011050
IPR009093
ATT
24–75
IPR009093 IPR039448 IPR006626 IPR006626
IPR006626
Unmapped
263–295
IPR006626 IPR006626 IPR006626 IPR006626
AUR85675.1
1 727
Architecture
ATT
STR
ATT 2-113 | STR 114-696 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AUR85675.1
1 727
Domain Start End Length (AA) Confidence
N-terminal 1 193 193 0,9826
Central domain 194 618 426 0,9725
C-terminal 619 727 108 0,9499
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-193
Central
194-618
C-terminal
619-727

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage 1.079.O._10N.286.45.E9
[NCBI] 		1881314 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio lentus
[NCBI] 		136468 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AUR85675.1 [NCBI]
Genbank nucleotide accession
MG592454.1 [NCBI]
CDS location
range 23654 -> 25837
strand +
CDS
ATGAGTTCAAATTTAATTAAACAACCATACGAGATGATTCTCGACCCAACCGGCGGCGGTGGCAGGGCTAAACCTGTTGCTAACGGTAAGTTTTACGTGGGTGAAATAGATAAAGATCCTATCGCAAATCCGCGTACTGACATCGTCTATAGGGATGAGTCAGGACAAGAGCGCCCGCTAGCATCACCACTAACCCTGAACAACTCAGGCGCGTTTGTAGTAAGTAAGAATGACGGCACCATCATCCTTCCATACATGAAAGACGGCATTGGGTTTTCGGTTCTCATTCAGGACGCACGCGGCCGTGATGTTTACTCAGATTTAAATACTGGCGACCCAGGCAATATAGTGGAGGCAATTTCTGAATACTCAGACATAGTTTTCAAGGCTTCAGGTGGTAATTCTGCTGTTGAGAATATGATTGATGAATTCAACATTAATCCTTTAATGTACGCGATTGGAACAATCACAAAAACAGGTGGCACGACATTTGGGTATATAGATTCTACTGGGCCAATAACCATTGATAACTTTAGGGCTTTCAATGCTATTCATATAAGTGACTTTACTGACGGTAGCGGAGCTGATGAGCGAGTTAACATCCAGTCTGCTCTTGATGCGGCAGAGGGCGGAAGGCTTGTTTTTGAGAGCAAGACCTACAATGTGTCTTTCGATGGCATTTACGGGGTAAGAGTTCCTTCCAATATCACCATCGACGGAAATAATGCCACAATACAGTGTGAGGCTACATCGCTAACCAACTACGGAATAGTTTTTCTATACAAGAAAGAAAATGTAGTAATAAACAACTTACACGTTGTCGGAGATGTAGAAACCCACACAGGAACAACTGGAGAGGCTGGTTATGGCTTTGAAGTTAGATCTTGCAAGGAAGTAACCCTAAACAACTGTTCAAGCTCTAAATGTTGGGGTGACGGATTGTTACTAGGTTCTGATTCGATTAGCACCAACGAAGGGGTTTACATCAATCACTGTGTATTTGACAGCAATAGAAGACAGGGTTCGTCTGTTGGGGGTGGCGTTAGGGTTGTTTATACCGGTTGTACATTTAAGAACACTGGCAGCATATTGTCTACAGCTCCGTCGGCGGGGATTGACATTGAACCAGACACAAACAAAATTGCAGACTTAGATGTAAAGTTAGTTAATTGCAACTCAGAGAACAACAAAGGCGGGGCTATACATGTAATCCTGAGCGGCTGTCTCAATGCGCCAACTTTAGAGCCGGGAGCGTGCCAAGTTAATGTAAACATCGTAAACTTTACATCAACGGGCGATGACTCATACAACACAACAGAGGGAAGGGCAGCAATTAGATTCGGTGGAACTAAAGCTACATATCCAGACCCGTCTAATGGAAACAAGCTTCAAGGGGGAGTTAATTTCACTAACGTAACTATATCAAACCCGGCTACTTCTGCGGTATGGTTGACAAATCCTATATCCGCCTATCCTCCGCTGAAATTTAATAACCTAACTGTAACGGATGTGTTTTCCGGTGTTCCAGTAGGGAGCTCGATGCCTACCGGCAATATTATTTACTTTGACATATTTGAAGGTGTAGGTATCAGCCCGGCTTTTGAGATTGGAGATATTGATTTTATAGGCCTGACTTATAGAGATACGCGAGGATTGACGTACAGTTCAACTGCGACAGAAAGCAATCACCGAGTAACTAGGCCGGTGTGGCATAAAAACCTAGAGTCTACAACCTCCCTTAAATCTGTTAGATTTAGACATTTCAAAACAGAAATACAACCCGCTACGCTAAACTTCCTTATGAACGGGTATCGTGGTGATGAGTGCAGTTTTGATAGAGATGCGATGTTTGTTGACCGAGATGCATCAATCACAGCGTCAGAAACTAACGGTAGGTGGGGCTTGGGGATTGTTCCTGTTATCGGCGAGCCAGGGACAACTGCATTAATCGTTGAAATGCCGACAACTGAAGATAGACAAGGCACATATCAAGTCATCAGGTCTTATCGAGACGCACCCAAAACAGGCCAAAGGCTAGTGTTTAGAACTTGCAGTGTTAGTGGGTTTACAGAGGAAATTTTATACAAGGACGGCACAAGAACATCTGCGCAAACAGAACCAGCACAGTCGCTTGGTGAGTTTGTATTCTTCTGCCCAAAGCAGGGGTTATGGGTTGAGATGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
d932a8c92cd2a3de33ba9e6a1709f3def6244a858f38292868ece922e1c91371
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6916
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A major lineage of nontailed dsDNA viruses as unrecognized killers of marine bacteria Kauffman,K.M., Hussain,F.A., Yang,J., Arevalo,P., Brown,J.M., Chang,W.K., VanInsberghe,D., Elsherbini,J., Cutler,M.B., Kelly,L. and Polz,M.F. 2018-01-24 — GenBank