Protein

View in Explore
Genbank accession
XQW41526.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
Protein sequence
MALNLDTLGLSATVTAEGISAPDYQTILDTLTSYFQQIYGSDAYLEPDSKDGQMVALSALAIHDANNTAITVYNCFSPATGYGAALTSNVKINGIARKGATNSTVDLLLTGTAGTTITNGTVKDTNNVIWRLPATVVIGVDGTVTVTATCSNSGSVAALAGTIITINTPTRGWTSVTNPAAATVGAPAETDAELRIRQGQSVALPSITPFEGVDGAIANVEGVTRHKLYENDTGATDSNGLPPHSISAIVDGGDVTDIAQTIRGNKGQGTATYGTTSVTVPDTYGNPHVISFSRSTDVPIYGHITLKAFTGYTSQIGVQIQQAVADYINGLTIGDSVLLSRVYSPANLGVVSGGAARYYDIQELLIGKSAGTVAAANVNIAYNESASCKLENIALTVTEPIMKYTDLITNYHATKPKYFDHIDLSTRPLIDVTAATRGLVSAFDIDTAVGVQLDALGLWIGRSRIVSQPIAGVYFSWDTDGLGYDQGVWQGPYDPDSGYTTLSDDTYHIILKAKIAINNWDGRNDSLPPILDAATAGSGLSMQIVDNQDMTISVWVFPETDISDVSLELIAAIKQGYLTVKAAGVWAGDVETPSVETPSE
Physico‐chemical
properties
protein length:600 AA
molecular weight: 62913,46010 Da
isoelectric point:4,44881
aromaticity:0,07000
hydropathy:0,04317

Domains

Domains [InterPro]
IPR006949
ATT
108–185
IPR006949 IPR021283
XQW41526.1
1 600
Architecture
ATT
TAS
ATT 108-185 | TAS 404-585 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Yersinia phage YP3
[NCBI] 		3388565 Viruses >
Host Yersinia ruckeri
[NCBI] 		29486 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XQW41526.1 [NCBI]
Genbank nucleotide accession
PV092592.1 [NCBI]
CDS location
range 634 -> 2436
strand -
CDS
ATGGCCCTCAACTTGGACACACTCGGCTTATCGGCAACGGTAACCGCTGAGGGGATCAGTGCGCCTGATTACCAGACGATACTCGATACCCTGACAAGCTATTTCCAGCAGATTTATGGCAGTGATGCCTATCTGGAACCGGACAGTAAAGACGGTCAGATGGTGGCGCTGTCGGCCCTGGCTATTCACGATGCAAACAACACAGCGATCACCGTCTATAACTGCTTTTCTCCGGCTACCGGCTACGGTGCGGCGCTGACCAGTAATGTGAAAATAAACGGTATCGCGCGCAAAGGTGCAACGAACTCAACTGTGGATTTGTTGCTGACCGGTACCGCAGGGACAACCATCACGAATGGGACCGTAAAAGACACCAATAACGTGATCTGGCGTCTTCCTGCCACGGTAGTAATTGGCGTTGATGGCACAGTTACGGTAACGGCTACCTGTTCAAACAGCGGATCTGTCGCCGCACTGGCCGGGACCATCATCACCATCAACACGCCGACTCGTGGCTGGACATCAGTAACAAATCCTGCAGCAGCCACCGTCGGCGCACCTGCAGAAACGGATGCAGAACTGCGCATCCGGCAGGGGCAAAGCGTCGCGCTACCATCCATCACACCGTTTGAGGGCGTCGACGGCGCGATTGCGAACGTGGAAGGTGTGACACGTCACAAGCTCTACGAGAATGATACTGGCGCTACCGATAGTAACGGGCTGCCGCCACATTCTATATCGGCCATCGTGGACGGCGGGGACGTGACCGACATTGCCCAGACTATCCGGGGTAATAAAGGGCAGGGAACGGCGACCTACGGGACGACCTCTGTCACGGTACCGGACACTTACGGCAATCCGCATGTGATTAGCTTCTCACGGTCAACGGATGTACCGATTTATGGTCACATCACACTGAAAGCGTTCACCGGATACACATCGCAAATCGGCGTGCAGATCCAACAGGCTGTTGCGGACTACATCAACGGGCTGACGATTGGTGATTCTGTGCTGCTAAGCCGTGTTTATTCCCCGGCGAACCTCGGTGTAGTGAGCGGAGGGGCTGCACGCTATTACGACATTCAGGAGCTGCTGATCGGCAAATCAGCCGGGACAGTCGCGGCGGCGAACGTCAATATCGCCTACAACGAATCAGCGTCGTGCAAGCTCGAAAATATAGCGCTTACGGTGACTGAGCCAATTATGAAGTACACGGACCTAATCACCAACTACCACGCCACGAAGCCCAAATACTTTGACCACATTGATTTGAGCACCCGGCCGCTGATTGATGTTACGGCAGCAACAAGAGGCCTGGTCAGTGCCTTTGATATCGATACGGCTGTGGGAGTCCAGCTCGATGCTCTCGGGCTATGGATTGGCCGCAGTCGTATAGTCAGTCAGCCCATCGCCGGCGTTTATTTCAGCTGGGACACTGACGGGCTAGGGTATGACCAGGGCGTCTGGCAGGGACCGTATGACCCGGATTCGGGCTATACGACGCTGAGCGATGATACCTATCACATCATTCTTAAAGCGAAAATCGCCATCAATAACTGGGACGGTCGGAACGACTCGCTGCCGCCCATTCTTGACGCTGCGACGGCAGGCTCTGGCCTGAGTATGCAGATCGTTGATAACCAGGATATGACGATATCAGTCTGGGTATTTCCCGAGACTGATATTTCTGATGTGTCTCTCGAACTGATCGCCGCTATCAAGCAGGGCTATCTCACCGTTAAAGCAGCTGGCGTGTGGGCCGGTGATGTTGAAACGCCTTCGGTAGAAACGCCGTCCGAGTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
8e7d257dcb7c1ebab7292f75554aff0ac7df259881dff03e88d899b6efb9fca8
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8442
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Yersinia ruckeri bacteriophage YP10S2 whole genome sequence Altinok,I., Ture,M., Cebeci,A., Ozturk,R.C. and Ustaoglu,D. 2023-03-01 — GenBank