Protein

View in Explore
Genbank accession
YP_007112632.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,97
Protein sequence
MAAGTLSVTNNSKAVVGVGTTFTAFNAGDFLSLVVGQVPYTVAIASVESDTALTLVLPFDGPTATGLAWDGVKRDTMSLATMGVTVQAQKALRLMIADENNWRAIFGDEEEITVTLPNGQVMQGMSWGYLSQLLKEVDPVEMRNLQQQATTAKNDAVTAKNQAVTAKNDAVTAKTGAETARDQANTAKTGAETARDQANTAKTGAETARDQSLTYRNQAEQFANSVNPDNILDQVGVGANPRHLPDINAPVKGFCRIIAGQTAGANGFSGAGWIAGYDGSQSYTGMFVQPDGNRIFAGGKSPAIAGGLWQWHEVPTIDRANTFTQSQEILASYPGLELTTTALNNNNLGKTILIENDAGDALNFFYKMLDDDTGRYTIRLPKPGYKTTMTIGLDGGLAPNGNSFNIGAVQGLDFSVGQQGWRAVGGAWTNGPTSGNLFGAVFTHAVQGLNVGGYDANGTDNHWFIQRFYDTSANIFTRVQVNDYPWGNWYKVTTSAVSDERLKDIKGNLNVEGALDNINRMEFKLFSFKNEKSESKQPVTRRGVISQQIRLIDKEYTTEVGGFYHLDQTPMLLDGLAAIKALRARDEANKAEIAELKAAVAELKAAVAALSKA
Physico‐chemical
properties
protein length:613 AA
molecular weight: 65699,66910 Da
isoelectric point:5,24774
aromaticity:0,08157
hydropathy:-0,27618

Domains

Domains [InterPro]
DC_0162
STR
1–613
DC_0162
Coil
Unmapped
142–162
Coil IPR030392 Coil
IPR030392
CHP
498–593
IPR030392
YP_007112632.1
1 613
Architecture
STR
STR 1-613
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage HK578
[NCBI] 		1147142 Uroviricota > Caudoviricetes > Dhillonvirus >
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_007112632.1 [NCBI]
Genbank nucleotide accession
NC_019724 [NCBI]
CDS location
range 21631 -> 23472
strand +
CDS
ATGGCAGCGGGTACACTATCCGTAACGAATAACAGCAAGGCGGTTGTCGGTGTAGGAACGACGTTTACCGCGTTTAATGCTGGCGACTTTTTATCGCTGGTAGTCGGGCAAGTGCCCTACACTGTTGCGATCGCGTCCGTCGAAAGCGACACCGCGCTTACGTTGGTGCTGCCGTTCGACGGCCCAACGGCAACTGGCCTCGCGTGGGATGGCGTTAAGCGCGATACCATGTCGCTGGCAACGATGGGTGTAACCGTACAGGCACAGAAAGCGTTGCGCTTGATGATCGCGGACGAAAACAACTGGCGCGCAATCTTCGGAGACGAAGAAGAGATCACGGTAACGCTGCCGAACGGGCAAGTTATGCAGGGTATGTCGTGGGGCTATCTGTCGCAATTGCTGAAGGAAGTTGACCCCGTTGAAATGCGCAACCTGCAACAACAAGCCACTACCGCGAAGAACGACGCCGTTACCGCAAAGAATCAAGCCGTTACCGCGAAGAACGACGCCGTTACCGCGAAAACGGGCGCGGAGACGGCGCGCGACCAGGCTAATACCGCAAAGACCGGTGCAGAGACGGCGCGCGACCAGGCTAATACCGCGAAAACGGGCGCGGAGACAGCACGGGATCAATCGCTGACTTACCGTAACCAGGCCGAGCAATTTGCTAACAGCGTTAATCCGGATAACATTCTGGATCAAGTCGGTGTTGGTGCAAACCCGCGGCACTTACCGGATATTAACGCGCCTGTGAAGGGATTCTGCCGTATTATCGCGGGTCAAACCGCGGGGGCGAATGGGTTTAGCGGGGCGGGATGGATCGCCGGTTACGACGGCAGCCAGTCTTATACCGGTATGTTTGTGCAGCCCGACGGTAACCGCATTTTCGCAGGCGGAAAATCACCAGCTATCGCTGGCGGGTTGTGGCAGTGGCATGAGGTGCCGACTATAGATCGAGCTAATACATTTACGCAATCGCAAGAAATTTTAGCGTCATACCCGGGCCTTGAACTGACAACAACCGCGCTCAATAACAACAATCTAGGGAAGACAATCCTTATTGAAAATGATGCGGGCGATGCTCTTAACTTTTTCTACAAGATGCTCGACGACGACACGGGACGTTACACCATTAGACTACCGAAGCCTGGGTATAAGACGACGATGACGATCGGGCTTGACGGAGGGTTGGCTCCAAACGGCAACTCGTTTAACATCGGTGCCGTTCAAGGATTGGACTTCAGTGTCGGGCAGCAAGGGTGGCGCGCGGTGGGCGGTGCGTGGACTAATGGCCCAACCAGCGGCAATCTGTTCGGGGCAGTATTCACCCATGCGGTGCAGGGTCTGAATGTCGGGGGGTATGACGCTAATGGCACGGATAACCACTGGTTTATACAGCGCTTTTACGACACGTCGGCGAATATCTTTACGCGCGTGCAAGTGAACGACTACCCGTGGGGTAACTGGTATAAAGTCACCACGTCCGCTGTGTCGGATGAACGCCTGAAGGATATCAAGGGCAATCTGAATGTGGAGGGTGCGCTGGATAACATCAACCGCATGGAGTTTAAACTGTTCTCGTTTAAAAATGAGAAGTCAGAAAGCAAACAGCCTGTTACGCGTCGCGGTGTTATCAGCCAGCAGATCCGTCTTATTGATAAAGAGTACACAACGGAAGTAGGCGGATTCTACCACCTGGACCAGACCCCGATGTTGTTAGATGGTCTGGCGGCAATCAAGGCTCTGCGCGCGCGTGACGAAGCAAATAAAGCTGAAATCGCGGAATTGAAAGCTGCCGTGGCGGAATTGAAAGCTGCCGTAGCGGCGCTGTCTAAAGCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
dbc4a505e3c14e3ffe7098faa7bd8c85afd07e8842f13ebefd8828677c001bbf
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7758
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The genomes of several lambdoid coliphages Refardt,D., Gencoglu,M., Kunzli-Gontarczyk,M., Bruggmann,R. and Kropinski,A.M. 2012-04 — GenBank