Protein

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Genbank accession
QDH50642.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,82
Protein sequence
MNVVGISSLGITTVTGVGQTALTVNGDARITGVLTVGQGSVTIGSTNITTEYINDLQYPTAGPLSNRNLIINGAMQVDQRNNGITSTASASAEYCIDRFTIQANVGTGHTTIQSNDAPDGFGHSLRLEVGSGSSPGADDFGRIYYSIEGYDVNCLNLGTAEVEAFTLSFYVKSSLSGTFGGTIKDEGAPSATYTFSYTVSATNTWERHTVTVPAGTFTSGTYQTQTGRGLLVSWDLGEGANRSLSTGYSTTAPGGQLGLTGGVKVLETAGATWLLTGVQLEIGTRATPFEHRTYSEELLKCQRYFVKIRNLSNGVARTMIMGGFTSTRAFGGIALPAMRIDPTTTYNNMRLEELDLTGSAVMTRFYTYTTQSDGWMIGMEANVASGLVANVPYYVRFSDDTSFVAFDADY
Physico‐chemical
properties
protein length:410 AA
molecular weight: 43585,94190 Da
isoelectric point:4,85498
aromaticity:0,09512
hydropathy:-0,08805

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QDH50642.1
1 410
Domain Start End Length (AA) Confidence
N-terminal 1 43 43 0,4041
Central domain 44 242 200 0,0310
C-terminal 243 410 167 0,9063
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-43
Central
44-242
C-terminal
243-410

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage S-B43
[NCBI] 		2484638 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Synechococcus sp. MW02
[NCBI] 		1620844 Cyanobacteriota > Cyanophyceae > Synechococcales > Synechococcaceae > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QDH50642.1 [NCBI]
Genbank nucleotide accession
MN018232.1 [NCBI]
CDS location
range 171294 -> 172526
strand +
CDS
GTGAATGTTGTTGGTATCTCCAGTCTCGGTATTACGACTGTGACTGGAGTTGGTCAGACTGCTCTGACAGTAAATGGAGATGCTAGAATCACTGGAGTTCTGACAGTTGGTCAGGGTTCAGTTACGATTGGTAGTACCAATATTACCACTGAATACATTAATGACTTACAATATCCTACTGCTGGTCCATTAAGTAATCGTAACCTGATTATCAATGGCGCGATGCAGGTTGATCAGAGAAATAATGGTATTACTAGTACAGCATCAGCCAGTGCCGAATATTGTATTGACAGGTTTACAATTCAAGCCAATGTTGGTACTGGACATACTACAATTCAAAGTAATGATGCTCCTGATGGATTTGGTCACTCATTAAGACTAGAAGTAGGAAGTGGGAGTTCTCCTGGAGCAGATGATTTTGGTAGAATATATTATAGTATTGAAGGATATGATGTTAACTGTCTGAACTTAGGCACAGCAGAGGTTGAAGCATTTACATTATCTTTTTATGTTAAATCATCACTAAGTGGAACATTTGGTGGTACTATTAAAGACGAGGGTGCACCTAGTGCAACCTACACATTTTCCTACACTGTAAGTGCAACAAATACTTGGGAACGTCATACAGTCACAGTACCTGCAGGAACATTTACAAGTGGAACATATCAAACTCAAACTGGTCGTGGATTATTAGTATCATGGGATTTGGGAGAAGGGGCAAATAGAAGTTTATCAACTGGATATAGTACAACTGCTCCTGGGGGTCAACTGGGATTGACGGGTGGTGTAAAAGTTTTAGAAACTGCAGGGGCAACTTGGTTATTGACTGGTGTCCAACTAGAAATAGGCACAAGGGCAACACCTTTTGAGCATAGGACATATTCAGAGGAATTATTAAAATGTCAGCGATATTTTGTAAAGATTAGAAATCTTTCAAACGGAGTAGCAAGAACAATGATAATGGGTGGTTTTACTTCTACAAGAGCATTTGGTGGAATTGCATTACCCGCCATGAGAATTGATCCTACAACAACTTATAATAATATGAGACTTGAAGAACTTGATTTGACTGGATCAGCTGTTATGACAAGGTTTTATACTTATACAACCCAATCAGATGGTTGGATGATAGGAATGGAGGCAAATGTAGCCTCTGGATTAGTTGCTAACGTTCCATATTATGTGAGATTTTCTGACGACACTTCCTTTGTAGCCTTCGACGCCGATTACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
a0384906bb7c4b42610ae048c9fba9d7c1bfc373c97c959cae97e0f4200e010a
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8009
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation, characterization and genome sequencing of the novel cyanophage S-B43 from the Bohai Sea, China Wang,M. 2020-10 — GenBank