Protein

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Genbank accession
QDH50642.1 [GenBank]
Protein name
putative carbohydrate binding domain containing protein
RBP type
TSP
Evidence RBPdetect
Probability 0,82
TF
Evidence Phold
Probability 1,00
Protein sequence
MNVVGISSLGITTVTGVGQTALTVNGDARITGVLTVGQGSVTIGSTNITTEYINDLQYPTAGPLSNRNLIINGAMQVDQRNNGITSTASASAEYCIDRFTIQANVGTGHTTIQSNDAPDGFGHSLRLEVGSGSSPGADDFGRIYYSIEGYDVNCLNLGTAEVEAFTLSFYVKSSLSGTFGGTIKDEGAPSATYTFSYTVSATNTWERHTVTVPAGTFTSGTYQTQTGRGLLVSWDLGEGANRSLSTGYSTTAPGGQLGLTGGVKVLETAGATWLLTGVQLEIGTRATPFEHRTYSEELLKCQRYFVKIRNLSNGVARTMIMGGFTSTRAFGGIALPAMRIDPTTTYNNMRLEELDLTGSAVMTRFYTYTTQSDGWMIGMEANVASGLVANVPYYVRFSDDTSFVAFDADY
Physico‐chemical
properties
protein length:410 AA
molecular weight: 43585,94190 Da
isoelectric point:4,85498
aromaticity:0,09512
hydropathy:-0,08805

Domains

Domains [InterPro]

No domain annotations available.

Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage S-B43
[NCBI] 		2484638 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QDH50642.1 [NCBI]
Genbank nucleotide accession
MN018232 [NCBI]
CDS location
range 171294 -> 172526
strand +
CDS
GTGAATGTTGTTGGTATCTCCAGTCTCGGTATTACGACTGTGACTGGAGTTGGTCAGACTGCTCTGACAGTAAATGGAGATGCTAGAATCACTGGAGTTCTGACAGTTGGTCAGGGTTCAGTTACGATTGGTAGTACCAATATTACCACTGAATACATTAATGACTTACAATATCCTACTGCTGGTCCATTAAGTAATCGTAACCTGATTATCAATGGCGCGATGCAGGTTGATCAGAGAAATAATGGTATTACTAGTACAGCATCAGCCAGTGCCGAATATTGTATTGACAGGTTTACAATTCAAGCCAATGTTGGTACTGGACATACTACAATTCAAAGTAATGATGCTCCTGATGGATTTGGTCACTCATTAAGACTAGAAGTAGGAAGTGGGAGTTCTCCTGGAGCAGATGATTTTGGTAGAATATATTATAGTATTGAAGGATATGATGTTAACTGTCTGAACTTAGGCACAGCAGAGGTTGAAGCATTTACATTATCTTTTTATGTTAAATCATCACTAAGTGGAACATTTGGTGGTACTATTAAAGACGAGGGTGCACCTAGTGCAACCTACACATTTTCCTACACTGTAAGTGCAACAAATACTTGGGAACGTCATACAGTCACAGTACCTGCAGGAACATTTACAAGTGGAACATATCAAACTCAAACTGGTCGTGGATTATTAGTATCATGGGATTTGGGAGAAGGGGCAAATAGAAGTTTATCAACTGGATATAGTACAACTGCTCCTGGGGGTCAACTGGGATTGACGGGTGGTGTAAAAGTTTTAGAAACTGCAGGGGCAACTTGGTTATTGACTGGTGTCCAACTAGAAATAGGCACAAGGGCAACACCTTTTGAGCATAGGACATATTCAGAGGAATTATTAAAATGTCAGCGATATTTTGTAAAGATTAGAAATCTTTCAAACGGAGTAGCAAGAACAATGATAATGGGTGGTTTTACTTCTACAAGAGCATTTGGTGGAATTGCATTACCCGCCATGAGAATTGATCCTACAACAACTTATAATAATATGAGACTTGAAGAACTTGATTTGACTGGATCAGCTGTTATGACAAGGTTTTATACTTATACAACCCAATCAGATGGTTGGATGATAGGAATGGAGGCAAATGTAGCCTCTGGATTAGTTGCTAACGTTCCATATTATGTGAGATTTTCTGACGACACTTCCTTTGTAGCCTTCGACGCCGATTACTAA

Tertiary structure

PDB ID
a0384906bb7c4b42610ae048c9fba9d7c1bfc373c97c959cae97e0f4200e010a
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8009
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation, characterization and genome sequencing of the novel cyanophage S-B43 from the Bohai Sea, China Wang,M. 2020-10 — GenBank