Protein

View in Explore

Genbank accession

YP_009816221.1 [GenBank]

Protein name

putative structural protein

RBP type

Evidence Phold

Probability 1,00

TSP

Evidence RBPdetect

Probability 0,87

TSP

Evidence RBPdetect2

Probability 0,90

Protein sequence

MSLVKLVQPSAADISLSQSGSVQDATVVVTPEMYGAVGNGTTEDTAAITSSINEQQGVLLRKGKKYLVSNFSNPYGVGFLGEGAVVEYGVGGYVKQNTYVDAYQHITGIENLATWYRLLHDQLNQPTRTLSVLFSGDSTTVGAGTIPGYRLNELVKTGMLHEGTSPAYGLNTINAGHSGAMTAHWADTYVDADIAANPDLYVLRWGINDPGYLRADGSPAPLDAGQQYPGRRTPQDFIDSLRKGLGKIRAVHGFQDASILLMTPNSTFDIPNARDALWYEEIKAGILQAARDYQCAFIDMYAIMQDTHALANILMDDPFGDGRGIHPNSAMNPIIAGYIVDVLSPRGIARKAARNAVVSVGGVERATLPTDTGSTFNYGIRMSRAVGGDGWPLDGVALTVRNPDEVMLQIISAYQLGASDYMYIRSGRSASLSGEAEGWNPMHILCTSPDPVNVTPEEGYAIGLTPGTELKVTRNGAAVTFSAGFVEKLVPGTSGIPAFTPICRIPHGFTPVRDSVLGTAVVWDGANGFESLPCRIRVNGVVELLRGTSFVTHRIYLNVAYDVR

Physico‐chemical properties

protein length:	564 AA
molecular weight:	60416,49880 Da
isoelectric point:	5,41451
aromaticity:	0,08333
hydropathy:	-0,06755

Domains

Domains [InterPro]

DC_2249
ATT
2–130

DC_2249 cd00229

IPR012334
STR
15–105

IPR012334 IPR036514

IPR011050
STR
21–83

IPR011050 IPR036514

SSF52266
STR
120–343

SSF52266

IPR013830
ENZ
136–330

IPR013830

YP_009816221.1

1 564

Architecture

ATT

STR

ATT 2-130 | STR 131-345 |

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Domains [InterPro]

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
DC_2249	ATT	DC_2249	2	130	Novel HMM	DC_2249	N-terminal	Low	Positional only	44 proteins / 44 hits
IPR012334	STR	IPR012334	15	105	Merged direct domain	Pectin lyase fold	Central	Low	Positional only	867 proteins / 867 hits
IPR011050	STR	IPR011050	21	83	Merged direct domain	Pectin lyase fold/virulence factor	Central	Low	Positional only	572 proteins / 572 hits
IPR036514	STR	IPR036514	106	344	Merged direct domain	SGNH hydrolase superfamily	Central	Low	Positional only	180 proteins / 180 hits
IPR036514	STR	IPR036514	106	345	Merged direct domain	SGNH hydrolase superfamily	Central	Low	Positional only	180 proteins / 180 hits
SSF52266	STR	SSF52266	120	343	Merged direct domain	SSF52266	Central	Low	Positional only	227 proteins / 227 hits
cd00229	ENZ	DC_0001	132	342	InterPro cluster	cd00229	C-terminal	High	Text match	480 proteins / 783 hits
IPR013830	ENZ	DC_0001	136	330	InterPro cluster	SGNH hydrolase-type esterase domain	C-terminal	High	Text match	480 proteins / 783 hits

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout

N-terminal

Central

C-terminal

YP_009816221.1

1 564

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	45	45	0,9616
Central domain	46	274	230	0,8754
C-terminal	275	564	289	0,8507

Legend: N-terminal Central domain C-terminal

3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring

N-terminal
1-45

Central
46-274

C-terminal
275-564

Taxonomy

	Name	Taxonomy ID	Lineage
Phage	Pectobacterium phage PPWS2 [NCBI]	2153295	Uroviricota > Caudoviricetes > Autographivirales > Corkvirinae > Kotilavirus
Host	No host information

Coding sequence (CDS)

Genbank protein accession

YP_009816221.1 [NCBI]

Genbank nucleotide accession

NC_048103 [NCBI]

CDS location

range 42737 -> 44431
strand +

CDS

ATGTCATTGGTAAAATTAGTACAACCTAGTGCAGCGGATATTAGTTTATCACAGAGCGGTTCGGTACAGGATGCTACTGTAGTAGTAACCCCCGAAATGTACGGGGCAGTAGGTAATGGTACCACGGAAGACACTGCCGCTATTACTTCTAGTATTAATGAACAACAGGGTGTGCTACTACGTAAAGGTAAAAAGTACCTAGTATCTAACTTTAGTAACCCATATGGCGTGGGGTTCCTAGGGGAAGGGGCGGTCGTGGAGTATGGTGTGGGTGGTTATGTTAAGCAGAATACATACGTAGATGCGTACCAACATATTACCGGGATAGAGAATCTAGCGACGTGGTACAGATTATTACATGACCAGCTGAATCAACCAACCCGTACCCTCTCGGTACTGTTTTCGGGCGACTCAACTACGGTAGGTGCTGGAACAATACCGGGTTATAGGCTTAATGAGTTGGTTAAGACTGGGATGCTGCATGAAGGAACATCCCCCGCATATGGTCTAAACACCATTAACGCAGGACACTCTGGTGCTATGACTGCACACTGGGCTGATACATATGTTGATGCTGATATAGCCGCTAATCCTGACCTGTACGTACTGCGGTGGGGTATTAATGACCCCGGTTATTTACGTGCTGACGGTTCACCTGCACCTCTCGACGCGGGTCAGCAGTACCCCGGTCGGCGTACCCCACAGGATTTCATAGACTCTTTACGTAAAGGGTTGGGGAAAATACGTGCCGTGCATGGGTTTCAAGATGCTAGTATCCTACTGATGACACCAAACTCCACCTTTGATATACCTAATGCACGTGATGCCTTGTGGTATGAGGAGATTAAGGCGGGTATATTACAGGCAGCCAGAGATTACCAGTGTGCGTTTATTGATATGTACGCAATCATGCAAGATACACATGCATTGGCTAATATACTGATGGACGACCCGTTTGGTGATGGTCGGGGTATACACCCTAACTCTGCAATGAATCCTATTATTGCAGGGTACATCGTTGATGTACTATCACCACGTGGTATAGCACGAAAGGCAGCACGTAATGCAGTGGTTAGTGTTGGCGGCGTAGAGCGAGCAACGTTACCAACAGATACCGGTAGTACATTCAACTACGGCATCCGTATGTCACGTGCTGTCGGTGGGGACGGTTGGCCCTTGGACGGCGTAGCATTGACTGTGCGTAACCCTGATGAGGTGATGCTGCAAATCATCTCTGCGTATCAGTTGGGTGCATCTGACTATATGTACATCCGCTCCGGTAGGTCAGCCTCATTAAGTGGTGAGGCCGAAGGGTGGAATCCAATGCACATCCTGTGTACATCCCCCGACCCCGTTAATGTAACCCCAGAGGAGGGTTATGCAATAGGTTTAACACCGGGTACAGAGTTGAAAGTTACACGTAACGGCGCGGCGGTCACGTTCTCTGCGGGTTTTGTGGAGAAACTAGTACCCGGTACCAGTGGTATACCTGCATTTACACCTATATGTCGGATACCTCACGGGTTTACACCTGTGCGTGACTCAGTACTAGGTACCGCAGTAGTGTGGGATGGTGCTAATGGGTTCGAGAGTCTACCGTGCCGTATCCGTGTAAATGGTGTAGTTGAGTTGTTGCGTGGTACATCATTTGTCACCCACCGTATTTACCTCAACGTGGCATACGACGTACGGTAG

Genome Context

Tertiary structure

PDB ID

3c25ba112e431fbbd6acfbd1c9081e4372dffa216087a96e0455b82f2240b9f5

ESMFold

Source ESMFold

Method ESMFold

Resolution 0,7106

Oligomeric State monomer

Download PDB

Model Confidence

Very high
pLDDT > 90

High
90 > pLDDT > 70

Low
70 > pLDDT > 50

Very low
pLDDT < 50

Literature

Title	Authors	Date	PMID	Source
Podoviridae phage infectious to Pectobacterium	Hirata,H. and Kashihara,M.	2009-09	—	GenBank

Protein

Domains

Domains [InterPro]

Domains [InterPro]

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

3D Structure with Domain Coloring

Domain Coloring

Taxonomy

Coding sequence (CDS)

Coding sequence (CDS)

Genome Context

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Model Confidence

Literature