Protein

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Genbank accession
YP_009842138.1 [GenBank]
Protein name
tail protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,84
Protein sequence
MTITNKDYDTWESKMYGLPYAVYSYYIDSTVAGENTAVIGASGDNVFSVVYTPFLDIADLELEEIPYDNKRFGNISEIRPEIKANPHVFRIKKLLKGSKFVGEFETYKVKKSIGGKRNWRNESKLYNYPYTYLMLSDGINDPMILKPQFCSIPSCSVGIKLSVSDRCSYGIFVQTYKGDTDGMTEALVSNDALELPCTSSAYANWVATSKNQTAQSIQNTVNQTILNDKIAKNKMNLGIANSVVGGVASAFTGNVGGVLDSVFGGIGSYMDKKHTNMQSQLTRESAISSALATANDMRSTPNTLLSQGSNIIYGLRNGGQELRLYRYGLTERYYEKIGDYFAQFGYKQNKMMKININSRYYYNYIKTIGINIKTNKIPNNYLNILKGIFDNGTTIWHIDNEGVEIGNYSMDNREV
Physico‐chemical
properties
protein length:415 AA
molecular weight: 46499,06030 Da
isoelectric point:8,53892
aromaticity:0,11325
hydropathy:-0,38145

Domains

Domains [InterPro]
DC_0687
ATT
1–103
DC_0687 IPR048710
IPR048710
STR
120–412
IPR048710
YP_009842138.1
1 415
Architecture
ATT
STR
ATT 1-103 | STR 104-413 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009842138.1
1 415
Domain Start End Length (AA) Confidence
N-terminal 1 54 54 0,4031
Central domain 55 253 200 0,7217
C-terminal 254 415 161 0,3247
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-54
Central
55-253
C-terminal
254-415

Taxonomy

  Name Taxonomy ID Lineage
Phage Clostridium phage CPD2
[NCBI] 		2420237 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Clostridium perfringens
[NCBI] 		1502 cellular organisms > Bacteria > Bacillati > Bacillota > Clostridia > Eubacteriales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009842138.1 [NCBI]
Genbank nucleotide accession
NC_048738 [NCBI]
CDS location
range 9660 -> 10907
strand +
CDS
ATGACAATAACTAATAAAGATTATGATACGTGGGAATCTAAAATGTATGGTTTACCATATGCTGTATATAGTTATTATATTGACTCTACCGTGGCGGGTGAAAATACAGCTGTTATAGGTGCAAGTGGTGACAATGTTTTTAGTGTTGTTTACACCCCTTTTCTAGATATTGCTGATTTAGAACTAGAAGAAATTCCATATGACAATAAAAGATTTGGTAATATTTCAGAAATTAGACCCGAAATAAAAGCAAATCCGCACGTTTTCAGAATCAAAAAATTACTAAAAGGTTCTAAATTTGTAGGTGAGTTTGAAACATACAAAGTAAAAAAGAGTATTGGTGGTAAAAGAAATTGGAGAAATGAAAGTAAATTATATAATTATCCGTACACTTATTTAATGCTAAGTGATGGTATAAACGACCCTATGATTTTAAAGCCTCAATTTTGTTCAATTCCTAGTTGTTCAGTTGGTATAAAATTATCTGTTTCAGACAGATGTTCTTATGGTATATTTGTACAAACTTATAAGGGTGATACAGACGGAATGACAGAAGCTTTAGTATCAAATGATGCACTTGAGCTACCTTGCACAAGTTCAGCATATGCAAATTGGGTTGCAACTTCAAAAAATCAGACAGCACAATCAATTCAAAATACTGTAAACCAAACGATTTTAAATGATAAAATAGCTAAAAATAAAATGAATTTAGGTATCGCAAATAGTGTAGTAGGTGGTGTTGCTAGTGCGTTTACTGGTAATGTTGGCGGTGTATTAGATAGTGTGTTTGGTGGTATTGGTTCATACATGGATAAAAAACATACTAATATGCAAAGTCAATTGACTAGAGAATCAGCTATCAGTTCAGCTTTAGCAACAGCGAACGACATGAGGTCAACACCTAATACTTTACTTAGTCAAGGTTCTAATATAATTTATGGTTTACGTAATGGTGGACAAGAGTTAAGACTTTATAGGTATGGTTTAACAGAAAGATATTATGAAAAAATAGGGGATTATTTTGCACAGTTTGGATATAAACAAAATAAAATGATGAAAATTAATATTAATTCAAGATATTATTATAACTATATAAAAACAATAGGAATTAATATAAAAACTAATAAAATTCCTAATAATTACTTAAATATCCTTAAAGGTATTTTTGACAATGGTACTACAATATGGCATATTGATAATGAAGGTGTTGAAATTGGTAATTATTCTATGGATAATAGGGAGGTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
1222a9db22d9917d23906831fe61ba3fb526ec41a2adf64d8d59669ccfbfbc66
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,3226
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of Clostridium perfringens phage CPD2 Shin,D. and Ryu,S. 2023-05-24 — GenBank