Protein

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Genbank accession
AIZ01516.1 [GenBank]
Protein name
outer capsid protein
RBP type
TSP
Evidence RBPdetect2
Probability 0,80
Protein sequence
MAVYIQGQEVLNIVAHVPNSAPTDLGEFRMAEQLAAKQPQITAQPVGGSIYDSQTLGLSIAANVFGSTAAYQWLVDGAPIQGANSTSFTFVPSGLGTFDVTCEIKAFGPMVTSEVASVTVEQTPVDLTWQVLPAGYGLPSNVSGLVGLNAIGSDGSLVVGAMGMEGMRSTDKGLTWSYIGNGFGTGQTSGTIIAICVVGNVVVVGGIAGSNVGVASRSTNGGVSWTKLPDFLNSGATASAINKILHVGGNKLIALLGNGYAAVSNDLGATWSALPRWLNSGGSDNNTSFFDGAVTATGAIIAVGQNGFASISRNGGVTWSALPRYLGMPTNTTISSIGVSDTAIVVGGSNGNCAISRNDGVTWSALPLNFGVPLGSGVRDRSIAGASNGTFLVGLGGSPISNSNGYLALSYDDGVTWQQPPRYLGIPNAGYGAVVNTIRNIDILTFLVGFTDKRGVRAVR
Physico‐chemical
properties
protein length:460 AA
molecular weight: 46838,16170 Da
isoelectric point:5,19391
aromaticity:0,07609
hydropathy:0,24391

Domains

Domains [InterPro]
DC_1032
ATT
1–81
DC_1032 IPR015943 IPR015943
SSF110296
STR
128–432
SSF110296
IPR058667
ENZ
174–429
IPR058667
cd15482
ENZ
189–417
cd15482
AIZ01516.1
1 460
Architecture
ATT
STR
ATT 1-81 | STR 82-456 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AIZ01516.1
1 460
Domain Start End Length (AA) Confidence
N-terminal 1 131 131 0,9922
Central domain 132 449 319 0,8593
C-terminal 450 460 10 0,2252
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-131
Central
132-449
C-terminal
450-460

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage H2 SGB-2014
[NCBI] 		2268915 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio cholerae
[NCBI] 		666 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AIZ01516.1 [NCBI]
Genbank nucleotide accession
KM612262 [NCBI]
CDS location
range 20442 -> 21824
strand +
CDS
ATGGCGGTATATATTCAAGGTCAAGAGGTGCTGAACATTGTTGCCCATGTGCCTAATTCTGCTCCGACCGATTTGGGTGAGTTTCGCATGGCGGAACAACTAGCAGCGAAGCAACCCCAAATCACAGCGCAGCCTGTGGGCGGTTCTATTTACGATTCGCAGACTTTGGGTTTGTCCATAGCGGCCAATGTGTTTGGCTCAACGGCTGCGTACCAGTGGTTGGTCGACGGCGCTCCAATCCAAGGGGCTAACTCTACGTCCTTTACCTTCGTTCCGTCAGGGTTGGGTACTTTTGATGTGACGTGTGAGATAAAAGCTTTCGGCCCAATGGTCACGAGCGAAGTAGCCTCGGTTACAGTCGAGCAAACTCCTGTTGATTTGACTTGGCAAGTCTTGCCTGCAGGATATGGTCTACCAAGCAATGTCAGCGGACTCGTTGGGCTGAACGCCATTGGTTCTGATGGCTCTTTAGTAGTAGGAGCCATGGGCATGGAAGGCATGCGCAGCACGGACAAAGGACTGACGTGGTCGTACATCGGCAACGGGTTCGGCACTGGACAAACATCGGGCACTATCATCGCCATTTGCGTGGTAGGGAATGTTGTGGTGGTGGGCGGAATTGCAGGGAGCAACGTCGGGGTGGCAAGTCGGTCAACCAACGGAGGTGTTAGTTGGACTAAACTTCCCGATTTCCTAAATAGCGGAGCCACAGCCAGCGCCATCAACAAAATTTTGCACGTAGGTGGTAACAAGTTAATAGCACTATTGGGGAACGGATATGCAGCCGTGAGCAACGATTTGGGGGCCACTTGGTCTGCGTTACCTCGTTGGCTGAACAGCGGCGGCTCAGACAACAATACATCCTTTTTCGATGGGGCGGTTACGGCAACGGGAGCCATAATCGCGGTAGGCCAAAATGGTTTTGCGTCAATAAGCCGAAACGGAGGCGTTACTTGGTCCGCTCTCCCTCGATACTTGGGCATGCCGACCAACACCACTATCAGTTCTATTGGTGTGAGTGACACTGCTATCGTAGTGGGAGGCAGCAACGGTAATTGCGCTATCAGCAGAAACGACGGCGTTACTTGGTCCGCTCTGCCTCTGAATTTTGGTGTGCCGCTAGGGTCAGGTGTCCGCGACCGCTCAATTGCGGGAGCCAGTAATGGCACGTTCTTGGTGGGGTTGGGCGGAAGTCCAATATCCAACAGTAACGGCTATTTGGCGTTGAGCTATGATGATGGCGTCACTTGGCAACAACCACCGAGGTATTTGGGTATCCCAAATGCAGGGTATGGCGCTGTGGTCAACACCATCAGAAATATTGATATCTTAACTTTCTTGGTGGGCTTTACTGACAAGAGAGGAGTGAGAGCGGTGAGATAG

Genome Context

Genome Context

Tertiary structure

PDB ID
71898fd2f69b406e9bf8d905fbbd2c7ce3ae11bacb665125e798c5a4b7abaa41
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8042
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequences of seven Vibrio cholerae phages isolated in China Bhandare,S.G., Warry,A., Emes,R.D., Su,J., Barrow,P.A. and Atterbury,R.J. — — GenBank