Protein

View in Explore
Genbank accession
AIZ01516.1 [GenBank]
Protein name
outer capsid protein
RBP type
TSP
Evidence RBPdetect2
Probability 0,80
Protein sequence
MAVYIQGQEVLNIVAHVPNSAPTDLGEFRMAEQLAAKQPQITAQPVGGSIYDSQTLGLSIAANVFGSTAAYQWLVDGAPIQGANSTSFTFVPSGLGTFDVTCEIKAFGPMVTSEVASVTVEQTPVDLTWQVLPAGYGLPSNVSGLVGLNAIGSDGSLVVGAMGMEGMRSTDKGLTWSYIGNGFGTGQTSGTIIAICVVGNVVVVGGIAGSNVGVASRSTNGGVSWTKLPDFLNSGATASAINKILHVGGNKLIALLGNGYAAVSNDLGATWSALPRWLNSGGSDNNTSFFDGAVTATGAIIAVGQNGFASISRNGGVTWSALPRYLGMPTNTTISSIGVSDTAIVVGGSNGNCAISRNDGVTWSALPLNFGVPLGSGVRDRSIAGASNGTFLVGLGGSPISNSNGYLALSYDDGVTWQQPPRYLGIPNAGYGAVVNTIRNIDILTFLVGFTDKRGVRAVR
Physico‐chemical
properties
protein length:460 AA
molecular weight: 46838,16170 Da
isoelectric point:5,19391
aromaticity:0,07609
hydropathy:0,24391

Domains

Domains [InterPro]
IPR015943
82–241
IPR015943 IPR015943
SSF110296
128–432
SSF110296
IPR058667
174–429
IPR058667
cd15482
189–417
cd15482
AIZ01516.1
1 460
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage H2 SGB-2014
[NCBI] 		2268915 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AIZ01516.1 [NCBI]
Genbank nucleotide accession
KM612262 [NCBI]
CDS location
range 20442 -> 21824
strand +
CDS
ATGGCGGTATATATTCAAGGTCAAGAGGTGCTGAACATTGTTGCCCATGTGCCTAATTCTGCTCCGACCGATTTGGGTGAGTTTCGCATGGCGGAACAACTAGCAGCGAAGCAACCCCAAATCACAGCGCAGCCTGTGGGCGGTTCTATTTACGATTCGCAGACTTTGGGTTTGTCCATAGCGGCCAATGTGTTTGGCTCAACGGCTGCGTACCAGTGGTTGGTCGACGGCGCTCCAATCCAAGGGGCTAACTCTACGTCCTTTACCTTCGTTCCGTCAGGGTTGGGTACTTTTGATGTGACGTGTGAGATAAAAGCTTTCGGCCCAATGGTCACGAGCGAAGTAGCCTCGGTTACAGTCGAGCAAACTCCTGTTGATTTGACTTGGCAAGTCTTGCCTGCAGGATATGGTCTACCAAGCAATGTCAGCGGACTCGTTGGGCTGAACGCCATTGGTTCTGATGGCTCTTTAGTAGTAGGAGCCATGGGCATGGAAGGCATGCGCAGCACGGACAAAGGACTGACGTGGTCGTACATCGGCAACGGGTTCGGCACTGGACAAACATCGGGCACTATCATCGCCATTTGCGTGGTAGGGAATGTTGTGGTGGTGGGCGGAATTGCAGGGAGCAACGTCGGGGTGGCAAGTCGGTCAACCAACGGAGGTGTTAGTTGGACTAAACTTCCCGATTTCCTAAATAGCGGAGCCACAGCCAGCGCCATCAACAAAATTTTGCACGTAGGTGGTAACAAGTTAATAGCACTATTGGGGAACGGATATGCAGCCGTGAGCAACGATTTGGGGGCCACTTGGTCTGCGTTACCTCGTTGGCTGAACAGCGGCGGCTCAGACAACAATACATCCTTTTTCGATGGGGCGGTTACGGCAACGGGAGCCATAATCGCGGTAGGCCAAAATGGTTTTGCGTCAATAAGCCGAAACGGAGGCGTTACTTGGTCCGCTCTCCCTCGATACTTGGGCATGCCGACCAACACCACTATCAGTTCTATTGGTGTGAGTGACACTGCTATCGTAGTGGGAGGCAGCAACGGTAATTGCGCTATCAGCAGAAACGACGGCGTTACTTGGTCCGCTCTGCCTCTGAATTTTGGTGTGCCGCTAGGGTCAGGTGTCCGCGACCGCTCAATTGCGGGAGCCAGTAATGGCACGTTCTTGGTGGGGTTGGGCGGAAGTCCAATATCCAACAGTAACGGCTATTTGGCGTTGAGCTATGATGATGGCGTCACTTGGCAACAACCACCGAGGTATTTGGGTATCCCAAATGCAGGGTATGGCGCTGTGGTCAACACCATCAGAAATATTGATATCTTAACTTTCTTGGTGGGCTTTACTGACAAGAGAGGAGTGAGAGCGGTGAGATAG

Tertiary structure

PDB ID
71898fd2f69b406e9bf8d905fbbd2c7ce3ae11bacb665125e798c5a4b7abaa41
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8042
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequences of seven Vibrio cholerae phages isolated in China Bhandare,S.G., Warry,A., Emes,R.D., Su,J., Barrow,P.A. and Atterbury,R.J. — — GenBank