Protein

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Genbank accession
YP_010755020.1 [GenBank]
Protein name
pre-neck appendage protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MSIPVLNGLPPIPGFDRPWSPTRPLVYEDHLTVARKLEFLSAWLQTNLIDHLNKEVAEIIEAIDKYRELIEASMGELDESVRERLAENEERINAAVLQVINSSIELQDPVMAGIVSDLTSATSEQLNLLFSRKFSIDVRDYGWVNSVLVDNTAAIQRAVNAGGIGGCVRLPPGIFTVNGTVNMLDGSHVVAAGIRTTTLRSEADVTMFRSVGGQAQGLHGFTIQHWQAGVRTTYDISFINPTRPTLSDIEVICSSTSSGAGGISFRKDSAQAGSNAFMPVLDRVWVRDGHLIIDGVTDGKVSNSYVWGPGRGTSTAAIHMTNISNSWTFTGVDVIPTPGDTGNGYYIHRTWNTAIVGGYIDGSYPDNMTGYGITVVDGGQLIVSGYNVYNVGRSAFRLVNTVGCVVGNTVISGANKTGLGYPDIDLVNSRNNTFLNTNHKQATDRAVKGAIFREDVASSHNKIDYTTLDISQGNFYAPQLIAANAGTQGKNCRPTALFPRPAGVGYALPVTRGAGAQGPWPGAGRIILSRFTVPDGAVYRYAAIRVEAGVGNMAACIYSVDGSGNLKKVSSSAGMPVNGATNVIFDLSSLYYAPGDYAFAVWADSTTIQTFMNSGNNLALSRLCGDLTNAGGLPETTAVASWNGTRELAPVALYA
Physico‐chemical
properties
protein length:655 AA
molecular weight: 69853,71910 Da
isoelectric point:5,64010
aromaticity:0,08244
hydropathy:-0,03420

Domains

Domains [InterPro]
DC_2082
ATT
2–135
DC_2082 IPR012334 DC_0747
Coil
Unmapped
49–69
Coil IPR011050
YP_010755020.1
1 655
Architecture
ATT
STR
RBD
ATT 2-135 | STR 136-478 | RBD 489-655
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010755020.1
1 655
Domain Start End Length (AA) Confidence
N-terminal 1 150 150 0,9864
Central domain 151 498 349 0,9922
C-terminal 499 655 156 0,9765
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-150
Central
151-498
C-terminal
499-655

Taxonomy

  Name Taxonomy ID Lineage
Phage Microbacterium phage PineapplePizza
[NCBI] 		2927268 Uroviricota > Caudoviricetes > Amherstvirus >
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010755020.1 [NCBI]
Genbank nucleotide accession
NC_073467 [NCBI]
CDS location
range 10378 -> 12345
strand +
CDS
ATGTCAATTCCCGTTCTCAACGGACTACCCCCTATTCCTGGGTTTGACCGTCCGTGGTCCCCGACACGTCCCCTCGTGTATGAGGATCATCTTACGGTTGCGCGAAAGCTCGAATTTCTTTCCGCGTGGTTGCAGACCAATCTGATTGACCATCTTAACAAAGAGGTCGCAGAGATCATCGAAGCAATCGATAAGTATCGCGAGCTTATCGAAGCATCAATGGGCGAACTTGACGAAAGCGTCAGGGAGCGTCTTGCCGAAAATGAAGAGCGAATTAACGCCGCCGTTCTGCAGGTAATCAACAGTTCAATCGAATTGCAAGATCCTGTTATGGCCGGAATTGTTAGCGATCTTACCAGCGCTACGTCCGAACAGCTAAACCTTTTGTTCAGTCGTAAATTCTCCATCGATGTGCGCGATTACGGATGGGTTAATTCCGTTCTCGTTGACAACACCGCCGCCATTCAGCGAGCCGTTAACGCCGGTGGCATTGGTGGCTGTGTTCGGCTCCCCCCTGGAATCTTCACCGTAAACGGAACGGTGAACATGCTTGACGGATCTCACGTTGTTGCGGCGGGCATTCGCACAACCACTCTGCGAAGTGAAGCGGACGTAACCATGTTCCGGTCTGTGGGTGGACAGGCACAGGGCTTGCATGGATTCACAATTCAGCATTGGCAGGCCGGTGTGAGAACAACTTACGACATTTCGTTTATCAACCCTACGAGGCCAACCCTTTCCGACATCGAAGTTATCTGCAGTTCTACAAGCTCGGGGGCGGGCGGGATCAGTTTCCGCAAGGATTCTGCACAGGCCGGAAGCAACGCTTTCATGCCTGTACTTGATCGCGTGTGGGTTCGAGACGGGCATCTGATTATTGACGGCGTTACCGACGGAAAGGTCAGTAACAGCTATGTCTGGGGTCCGGGTCGCGGAACCTCCACAGCCGCTATTCACATGACAAACATTTCCAATAGCTGGACCTTCACGGGTGTTGACGTTATCCCCACGCCGGGTGATACCGGAAACGGTTACTACATTCACCGCACGTGGAACACGGCAATTGTCGGTGGGTACATCGATGGTTCATATCCCGACAACATGACTGGATACGGCATCACCGTTGTTGACGGCGGTCAGCTCATCGTTAGCGGATACAACGTGTACAACGTTGGTAGAAGCGCGTTCCGACTCGTGAACACAGTTGGATGTGTAGTGGGAAATACCGTTATCAGCGGTGCCAACAAGACGGGACTTGGATACCCAGACATCGATCTTGTAAATTCTCGAAACAACACTTTCCTGAACACGAATCACAAGCAGGCAACAGATCGCGCTGTAAAGGGCGCTATCTTCCGTGAGGATGTCGCATCCAGCCATAACAAGATCGACTACACCACGCTCGATATTTCGCAGGGTAATTTCTATGCCCCTCAGCTAATTGCTGCAAATGCGGGCACCCAGGGAAAGAACTGCCGCCCTACAGCGTTGTTCCCTCGCCCTGCCGGTGTTGGATACGCCCTTCCCGTAACACGAGGCGCCGGTGCGCAAGGTCCGTGGCCTGGTGCGGGTCGAATCATCCTTAGTAGATTCACCGTTCCAGATGGTGCCGTATATCGCTACGCCGCAATTAGGGTAGAGGCAGGTGTCGGAAACATGGCCGCGTGCATCTATTCTGTCGACGGTTCGGGCAATCTCAAGAAGGTTTCGTCTAGTGCGGGAATGCCTGTGAACGGCGCAACGAATGTGATCTTTGATCTTTCGTCACTGTATTACGCGCCTGGTGATTACGCTTTCGCCGTGTGGGCTGATTCGACCACAATTCAAACGTTTATGAATAGTGGCAACAATCTTGCTCTAAGTCGACTGTGCGGGGATCTGACAAACGCGGGAGGTTTGCCAGAAACAACCGCCGTAGCATCATGGAACGGAACTCGCGAACTCGCGCCCGTTGCCCTGTACGCTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
e92dff9697fd9cc8114955b72a326cefbe5d8bc0e5de4cf734fe6c34baf99e57
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7497
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50