Protein

View in Explore
Genbank accession
YP_009014970.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MAQYEDKVVEVLVTVPDPSTSTSGGSGAPFTGIETQDTVSTTLIGDGTQSSPLLANVNVSRRAGNRLQVVSSSDEQGLFVGSSDTKISSKEGNTVTYISAQDAANAGNPALEGVYSDPVNVSTTSPNKTLDIKADPTGKAKTQIDVIIDPSAQNALKVGSAGLNVPVSTAQDNMLEIRQGAMYVRPQETKISADPANKIEMKSDGIFVETIKGDKGDTGATGPQGPIGPTGPQGPEGPEGLTGPQGPQGETGPQGATGPAGPAGAQGARGPEGPKGPAGIGINVIDQLSDVSQLPPVADMELGDTYVINQNFWTVVEEGGVKQWKNLGSFAGPQGLSAYEVAVNAGFEGTEDEWLSSLKGADGIGLQILGSFPDPSFLPMEGNSNGDCYIIQDKMYVWAGETDKWQTVGQVGPEGKSAYQVWLDNGHTGSQVDFLNSLIGPTGPTGPKGDKGDPGVDGTNANAINILGKVADEGSLPTGADAGDAYLIGTDVWVSTGNGNWENLGAFQGPKGDTGDTGPQGPQGVKGDKGETGKDNYALAVESGFTGSLTEYLASLKGAKGDTGPQGPRGATGLTGPQGPVGEGVAILGEKASEAELPANPVTGDAWLIGDDLYIFNGTAWQNVGPVRGPKGDTGAQGPAGPKGDTGATGPAGPAGEQGPKGDQGDVGPQGTGLTPKGTVPNEASLPTTGNVQGDFWTTVDTGEGFAWDGLQWVNTGMARGNTGPKGDTGDTGPAGPKGDTGDSGAGVIPKGTVASEAELPPSGNTVGDYYVTEDTGTGFSWNGTVWVNMGVVRGPVGPTGATGETGATGAQGPKGDQGDIGPQGPQGDMGPGVEIIGKLNSSSELPPTGTLGQGYLIEGDFWGWTGSAYENLGPIQGPIGPTGPQGNTGPTGPQGVKGDKGDQGSLWIVFARNPTPADGRVGDYFLNSSTLEFFLKTNATTWGSLGHMGGGNVYDAPKDGKQYSRIDGDWTLISVLEAPQDSGYYVRSNGAWVKLDRYDLRVMSATGALDAAVSNVFTVDGTTSKTITISNLPAGRAMTVVVKFIGKGGSMTWPTPMAWSNGTQPALGTTRTILTFFWDGTDLTGVQAMTVD
Physico‐chemical
properties
protein length:1093 AA
molecular weight: 111175,72910 Da
isoelectric point:4,30364
aromaticity:0,06496
hydropathy:-0,41802

Domains

Domains [InterPro]
DC_1546
STR
54–439
DC_1546 G3DSA:1.20.5.320 DC_0931
IPR008160
STR
222–278
IPR008160 IPR050149 G3DSA:6.20.230.10 G3DSA:6.20.230.10
DC_1340
STR
423–551
DC_1340 G3DSA:1.20.5.320
DC_1340
STR
535–653
DC_1340
YP_009014970.1
1 1093
Architecture
STR
RBD
STR
RBD
ATT
RBD
STR 54-653 | RBD 654-875 | STR 876-926 | RBD 927-951 | ATT 952-998 | RBD 999-1092 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Cronobacter phage CR9
[NCBI] 		1162290 Uroviricota > Caudoviricetes > Vequintavirinae > Certrevirus CR9 >
Host Cronobacter sakazakii
[NCBI] 		28141 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009014970.1 [NCBI]
Genbank nucleotide accession
NC_023717.1 [NCBI]
CDS location
range 7051 -> 10332
strand +
CDS
ATGGCACAATACGAAGATAAGGTCGTAGAGGTACTGGTTACCGTACCAGATCCTTCTACGAGCACCTCAGGCGGGTCTGGTGCCCCTTTCACGGGGATCGAGACACAAGACACCGTATCTACCACACTGATCGGTGATGGTACTCAATCCTCTCCTCTTCTGGCAAACGTCAATGTCTCCCGTCGTGCAGGTAACCGCCTTCAGGTGGTAAGCTCCTCAGACGAGCAGGGCCTCTTTGTTGGAAGTTCCGACACCAAGATTTCCTCAAAAGAAGGGAACACGGTAACGTACATTTCTGCACAGGATGCAGCTAACGCTGGTAACCCGGCGCTGGAAGGAGTATACTCCGATCCTGTAAACGTATCAACCACGTCACCAAACAAGACTCTGGATATCAAAGCTGACCCTACCGGGAAGGCCAAGACCCAGATCGACGTGATCATTGATCCAAGTGCCCAGAACGCCCTTAAGGTTGGTTCCGCTGGCCTGAATGTTCCTGTCTCCACTGCACAGGACAACATGCTCGAAATCCGCCAAGGCGCTATGTATGTTCGCCCGCAAGAGACCAAAATCTCTGCCGATCCGGCGAACAAGATCGAGATGAAGTCTGACGGTATTTTCGTCGAGACTATCAAGGGTGATAAAGGCGATACCGGGGCTACCGGGCCGCAAGGTCCGATTGGTCCAACAGGGCCCCAGGGTCCGGAAGGTCCAGAAGGTCTGACAGGACCACAAGGTCCTCAGGGCGAAACTGGCCCTCAAGGTGCAACAGGTCCCGCTGGCCCAGCCGGGGCACAGGGTGCCCGTGGTCCGGAAGGTCCTAAAGGCCCAGCCGGGATCGGCATCAACGTCATCGACCAACTGAGTGATGTTTCCCAGTTGCCACCTGTGGCGGATATGGAACTCGGCGACACTTACGTCATCAACCAGAACTTCTGGACGGTGGTAGAAGAGGGCGGGGTTAAACAGTGGAAAAACCTCGGCAGCTTTGCTGGCCCTCAGGGCCTGTCTGCGTATGAAGTCGCAGTTAACGCAGGCTTCGAAGGGACAGAGGATGAATGGCTTAGTTCCCTGAAAGGGGCTGACGGCATCGGTCTCCAGATCCTCGGATCTTTCCCTGATCCATCCTTCCTCCCAATGGAAGGTAACAGCAATGGCGATTGCTACATCATCCAGGACAAGATGTATGTCTGGGCAGGTGAAACCGATAAATGGCAAACTGTAGGCCAAGTCGGGCCGGAAGGTAAGTCTGCGTATCAGGTTTGGCTGGATAACGGTCACACTGGTTCTCAGGTTGACTTCCTGAACTCCCTCATCGGGCCAACCGGACCAACCGGACCGAAGGGCGATAAAGGTGACCCTGGTGTGGACGGTACAAACGCCAACGCCATCAACATTCTTGGTAAGGTAGCAGACGAAGGTAGTCTCCCTACCGGAGCAGATGCAGGTGACGCATACCTGATCGGTACGGATGTTTGGGTATCAACCGGGAACGGAAACTGGGAGAACCTCGGGGCATTCCAAGGGCCTAAAGGCGATACCGGGGACACAGGACCTCAAGGCCCTCAGGGTGTGAAAGGTGATAAAGGCGAAACTGGCAAGGACAACTATGCTCTTGCGGTTGAGTCCGGATTCACAGGTTCACTTACCGAATATCTTGCCAGTCTGAAGGGTGCAAAAGGCGACACAGGACCTCAAGGCCCTCGTGGGGCCACTGGCCTGACTGGTCCTCAAGGACCTGTCGGTGAAGGTGTTGCGATCCTCGGCGAGAAAGCGAGTGAGGCAGAACTTCCTGCAAACCCAGTGACGGGTGATGCATGGCTGATCGGTGACGACCTGTACATCTTTAACGGTACTGCATGGCAGAACGTTGGACCAGTTCGTGGTCCGAAGGGTGATACTGGGGCGCAGGGTCCAGCCGGACCTAAAGGCGACACTGGCGCTACCGGACCTGCTGGCCCGGCGGGCGAACAGGGTCCAAAAGGTGACCAGGGGGACGTTGGCCCACAAGGAACTGGCCTGACTCCGAAAGGCACTGTCCCTAACGAAGCTTCCCTCCCAACCACCGGGAACGTTCAGGGTGACTTCTGGACAACTGTTGACACAGGTGAAGGTTTTGCTTGGGATGGTCTCCAGTGGGTTAATACCGGAATGGCACGTGGTAACACCGGGCCTAAAGGTGATACTGGTGATACCGGACCTGCTGGTCCGAAGGGCGACACTGGCGATAGTGGCGCAGGAGTAATCCCTAAAGGGACAGTAGCTTCTGAGGCAGAACTGCCACCATCTGGTAACACCGTCGGGGACTACTATGTTACCGAGGACACCGGGACAGGTTTCTCTTGGAACGGTACTGTCTGGGTAAACATGGGTGTCGTTCGTGGCCCAGTTGGTCCTACAGGTGCCACAGGTGAAACTGGTGCCACCGGGGCACAAGGTCCTAAGGGTGATCAGGGGGATATTGGTCCTCAAGGTCCTCAAGGTGACATGGGTCCGGGTGTAGAGATCATCGGCAAGCTGAACAGCAGTTCTGAGCTGCCGCCAACCGGAACGCTGGGCCAGGGTTACCTGATCGAGGGCGATTTCTGGGGTTGGACGGGTTCTGCCTACGAAAACTTGGGTCCTATCCAAGGTCCAATCGGACCTACTGGTCCTCAAGGTAACACAGGTCCTACCGGGCCTCAGGGTGTTAAAGGTGATAAAGGTGACCAAGGTTCCTTGTGGATCGTGTTCGCTCGTAACCCTACCCCTGCTGATGGACGTGTCGGGGATTACTTCCTGAACTCCTCTACCCTTGAGTTCTTCCTGAAGACAAACGCAACCACTTGGGGTTCTCTGGGCCACATGGGTGGTGGTAACGTCTACGATGCGCCTAAGGATGGTAAGCAGTATTCCCGTATCGACGGTGACTGGACACTGATCAGCGTTCTTGAAGCGCCTCAGGATTCCGGCTACTACGTCCGTTCAAACGGTGCGTGGGTTAAGCTTGACCGTTACGACCTCCGTGTGATGTCTGCCACTGGTGCGCTGGATGCCGCTGTGTCCAACGTGTTCACCGTTGACGGAACCACGTCCAAGACAATTACCATCTCCAACCTGCCAGCAGGCCGTGCGATGACAGTAGTTGTTAAGTTCATCGGCAAAGGCGGCTCTATGACGTGGCCTACCCCGATGGCTTGGTCAAACGGAACCCAGCCTGCGCTTGGTACAACCCGTACCATCCTGACGTTCTTCTGGGACGGCACGGACCTGACGGGTGTTCAGGCGATGACTGTAGACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
4661ecb1570ad2197b45fb8fa19301188b2a4ce10fb267dc03b6b2e7137a0679
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6326
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete Genome Sequence of Cronobacter sakazakii Bacteriophage CR9 Shin,H., Lee,J.-H., Kim,Y. and Ryu,S. 2012-06 — GenBank