Protein

View in Explore
Genbank accession
AGH07726.1 [GenBank]
Protein name
tail spike protein
RBP type
TSP
Evidence Phold
Probability 1,00
Protein sequence
MALLVPNIGEIESLRYLIAQNNFVADLEDTSPRNLVLKLFTSNTTPAEGDVPSATAYFEPYIDGNVNGYGTTANTGYPVCVNNRGDQDYNQQYGILLNGSRWVIKNVGSGTTATYPEQTFTFTGPAGNIYGYYVTRANNMPVAVQGVVHGAGVGIGTTVTKGNNTDPTIGVVGNSYLTIDPQVSIDDLTLGQFVAGNAGIATGTKIIGIDRAYRTIYLDKPLVDNIQVATDPSVTFSFGKITFANHGLRAGDILYVSAGAGNTTLESNVYTVFNVPNADEFVTTPSLSATSNGVLGLNTATLYSSIMYAERFTNGPYNIQNNGDQIKITLNVALD
Physico‐chemical
properties
protein length:335 AA
molecular weight: 35623,20960 Da
isoelectric point:4,53026
aromaticity:0,09552
hydropathy:-0,05731

Domains

Domains [InterPro]
IPR023366
STR
229–305
IPR023366
AGH07726.1
1 335
Architecture
STR
STR 229-305 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AGH07726.1
1 335
Domain Start End Length (AA) Confidence
N-terminal 1 109 109 0,2347
Central domain 110 308 200 0,3214
C-terminal 309 335 26 0,9289
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-109
Central
110-308
C-terminal
309-335

Taxonomy

  Name Taxonomy ID Lineage
Phage Cyanophage S-SSM6a
[NCBI] 		682650 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AGH07726.1 [NCBI]
Genbank nucleotide accession
HQ317391.1 [NCBI]
CDS location
range 208138 -> 209145
strand +
CDS
ATGGCATTACTCGTTCCTAATATTGGTGAAATTGAGTCGCTACGTTATCTGATTGCTCAGAATAACTTTGTCGCAGATTTAGAAGATACATCACCGCGAAATCTTGTATTAAAACTTTTTACAAGTAACACGACCCCTGCTGAGGGCGATGTTCCGTCTGCAACTGCGTACTTTGAACCCTACATTGACGGAAACGTTAACGGTTACGGTACTACTGCAAACACTGGTTATCCTGTATGTGTAAACAACAGAGGAGATCAGGACTATAACCAGCAGTATGGTATCCTGTTGAACGGATCTAGATGGGTGATCAAGAACGTTGGTAGTGGTACGACTGCTACATATCCAGAACAAACATTTACTTTCACTGGACCTGCTGGTAACATCTACGGTTACTACGTTACTAGAGCAAATAACATGCCTGTTGCAGTACAGGGTGTTGTTCATGGTGCTGGTGTTGGTATTGGAACCACCGTTACTAAGGGTAATAACACAGACCCAACTATCGGTGTTGTCGGTAACTCTTACCTCACAATCGACCCACAAGTTAGCATTGACGACTTAACATTAGGACAGTTCGTTGCTGGTAACGCTGGTATCGCAACTGGTACGAAGATTATCGGTATTGACAGGGCTTACAGAACGATTTACCTAGACAAACCTCTGGTTGATAACATTCAGGTCGCGACTGACCCATCAGTTACATTCAGTTTCGGTAAGATTACGTTCGCCAACCACGGACTTAGAGCGGGTGATATCCTCTATGTTTCTGCTGGTGCTGGTAACACAACTCTTGAGTCTAATGTTTACACCGTGTTCAATGTTCCTAATGCAGATGAGTTTGTAACAACTCCTTCATTAAGTGCAACTTCTAATGGTGTGTTAGGTCTTAACACTGCGACTCTCTACAGTTCAATCATGTACGCTGAGAGATTCACAAACGGTCCTTACAACATCCAGAACAACGGAGACCAAATCAAGATTACTCTTAACGTCGCACTCGACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
5b393da07a9bc9fdf4bdbc3ea891a6c3013becdc39ed831ef0365d260ba9edb3
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,9077
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Cyanophage S-SSM6a Henn,M.R., Sullivan,M.S., Osburne,M.S., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Yu,Q., Coleman,M.L., Huang,K.H., Weigele,P.R., DeFrancesco,A.S., Kern,S.E., Thompson,L.R., Fu,R., Hombeck,B., Chisholm,S.W., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank