Protein

View in Explore
Genbank accession
XPK41838.1 [GenBank]
Protein name
membrane protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MAYGIWAQPVGPGPAAPAPLFIDSGSTFPQIKNTISGSFNFNGGGRSFPISGWDGSGQIVIVPTGSLCWQWEVPPNLVPDVYCVNNIYVENTTSFRVNLNQNPGSNPLFDCGFNVYQIWPRADRNYGITFSNTADYFSISDAGVVGQCVWAWQGTINNALQIPDIGGFYMPNAVVFANWSDGGLGLSYTSGDRVIRVYQNRPYINGNTNEGGSVFARVAVFCNGAGVPEHNGGLNIYSPGTTQCVFSTNRTPFTIDNFIGSGGGNTGMAYPMIPLSSGIGAIKGQGSGWRYQQMRSHTMSGSSVGTGYGRYLFQWDQNYDLGSDTVVNLSIPVINAAKVFAGL
Physico‐chemical
properties
protein length:343 AA
molecular weight: 36757,58400 Da
isoelectric point:5,26832
aromaticity:0,13120
hydropathy:-0,09242

Domains

Domains [InterPro]
DC_1434
ATT
1–40
DC_1434
IPR045604
STR
36–315
IPR045604
XPK41838.1
1 343
Architecture
ATT
STR
ATT 1-40 | STR 41-315 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XPK41838.1
1 343
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,0095
Central domain 11 209 200 0,0167
C-terminal 210 343 133 0,9975
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-209
C-terminal
210-343

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage KarlSchell_Bas89
[NCBI] 		3398421 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XPK41838.1 [NCBI]
Genbank nucleotide accession
PQ850613 [NCBI]
CDS location
range 18990 -> 20021
strand +
CDS
ATGGCATATGGAATTTGGGCACAACCTGTAGGGCCGGGGCCAGCTGCCCCTGCTCCTCTCTTTATAGATAGCGGGAGTACTTTCCCTCAGATAAAGAACACCATAAGCGGCAGTTTCAACTTTAACGGCGGTGGGAGATCTTTCCCTATTAGTGGGTGGGATGGTTCAGGTCAGATTGTTATTGTCCCAACAGGATCTCTTTGTTGGCAATGGGAAGTTCCACCTAACCTAGTACCAGATGTTTATTGTGTAAACAATATCTACGTAGAGAACACCACATCGTTTCGTGTCAACCTTAATCAGAACCCCGGAAGCAACCCTCTTTTCGATTGCGGTTTTAACGTTTACCAAATCTGGCCCAGAGCTGATAGGAACTACGGTATAACCTTTTCTAATACAGCGGATTACTTCTCTATCTCTGATGCTGGAGTTGTTGGTCAGTGTGTTTGGGCTTGGCAAGGAACAATAAACAATGCTTTACAAATTCCAGATATCGGTGGATTCTATATGCCTAACGCTGTGGTTTTTGCTAACTGGTCTGATGGTGGTTTAGGTCTGTCTTACACTTCTGGTGACAGGGTTATACGTGTTTATCAAAACCGTCCATATATTAACGGAAACACTAACGAAGGCGGTTCTGTCTTTGCTAGAGTTGCTGTGTTTTGTAATGGTGCTGGAGTTCCTGAGCACAATGGTGGTTTGAATATTTACTCACCGGGAACTACACAGTGTGTGTTCTCGACAAATAGGACACCTTTTACCATCGACAATTTTATAGGTTCTGGTGGGGGTAACACTGGAATGGCTTACCCTATGATACCTCTTTCCTCTGGTATTGGGGCTATAAAGGGTCAAGGGAGTGGTTGGAGATATCAGCAGATGAGATCTCATACAATGTCCGGTTCTAGTGTAGGAACGGGTTATGGGAGATATCTTTTCCAGTGGGATCAGAATTACGATTTAGGGTCTGATACTGTGGTCAATTTATCTATACCTGTAATTAATGCAGCTAAAGTTTTTGCTGGTTTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
fa42e92c2b639defe480425e1e3acd63ce9a8ee108251cb2139b4c1021b2c3ea
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6867
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequences of Escherichia coli phages Huey, Dewey, and Louie Maffei,E., Willi,L. and Harms,A. — — GenBank