Protein

View in Explore
Genbank accession
AHZ95222.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,94
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
Protein sequence
MSVVVSGTLKSPDGQVVSDANITLTALTVSPDALSGTSASAVTTSTGYYGMTMEPGEYAVSVTVRGKSQVYGRVRIDGTESSVTLNMLLRRSLVEVSISDELLTDFRQIQNNVADDLTTIRELKEESVKNNTGLTQARESAEASARSASESAATATARAEETEQKAEEAKASATNAAASAEEARQHAENAQSAQATAEDVLERAEAAVVSAEEARSMAENARGPKGDTGPKGDTGPRGETGPAGPQGPTGARGETGPQGSVGPAGPRGEKGEQGERGPQGLQGLKGETGERGPQGVQGPAGPTGATGPAGPRGERGEQGIQGPAGATGPVGPQGERGIQGPAGPAGPRGETGARGEKGDPGDPGGPPGPKGDTGPAGPAGEKGEPGERGPQGLQGPPGPAGERGPTGEAGPAGQPGPKGDPGPAGPQGPAGERGAQGPQGVAGPVGPAGAAGAKGDKGDPGPAGPQGQPGPQGPAGETGPAGEPGPRGEPGPQGLKGDRGEPGPTGPQGPAGERGPQGPQGVAGPVGPAGEPGAKGDKGDPGGTELLASANTWTQPQTINGNLTVTGNGSFNDVQIRSDKRNKRNAIRIDNCLEKLDLLTGYLYEIQNADGSWQQSVGLFAQDALKAQPELVTSDTDIISGEERFRLNYNGVIALLVEGIKNLRKEISDLKEK
Physico‐chemical
properties
protein length:673 AA
molecular weight: 67033,17390 Da
isoelectric point:4,80729
aromaticity:0,01932
hydropathy:-0,77979

Domains

Domains [InterPro]
IPR013609
1–114
IPR013609 Coil IPR008160 IPR050149 IPR030392 Coil
IPR008969
5–92
IPR008969 Coil IPR008160 IPR030392
G3DSA:2.60.40.1120
5–101
G3DSA:2.60.40.1120
AHZ95222.1
1 673
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Shigella phage POCJ13
[NCBI] 		1498227 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Shigella flexneri 2a
[NCBI] 		42897 Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacteriales > Enterobacteriaceae > Shigella

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AHZ95222.1 [NCBI]
Genbank nucleotide accession
KJ603229.1 [NCBI]
CDS location
range 37903 -> 39924
strand +
CDS
GTGAGTGTTGTTGTTTCGGGGACGCTGAAATCGCCTGATGGTCAGGTTGTATCAGATGCGAACATTACGCTGACGGCGCTGACTGTTTCACCGGATGCACTCAGTGGCACCAGCGCGTCGGCAGTCACCACGTCAACAGGTTATTACGGCATGACGATGGAGCCGGGGGAGTATGCGGTTTCCGTAACGGTGAGAGGTAAAAGCCAGGTCTATGGCCGGGTACGCATTGACGGAACGGAAAGTTCGGTGACGCTCAACATGCTGCTGAGGCGCAGTCTGGTCGAGGTGAGTATCAGTGATGAACTGCTGACAGATTTCCGGCAGATACAGAACAACGTTGCAGATGACCTTACCACTATCCGGGAACTGAAAGAAGAGTCAGTGAAGAACAACACCGGACTCACGCAGGCCAGGGAAAGTGCGGAAGCCAGTGCCCGGTCGGCATCGGAGAGTGCTGCGACAGCAACGGCCCGCGCCGAAGAGACAGAACAGAAAGCAGAAGAGGCCAAAGCGTCTGCGACAAATGCGGCTGCGAGTGCGGAAGAGGCCAGACAGCACGCGGAAAATGCGCAGAGTGCACAGGCGACAGCCGAAGATGTCCTTGAGCGGGCAGAGGCCGCAGTAGTCAGCGCAGAGGAAGCCCGAAGCATGGCTGAGAATGCCAGAGGCCCCAAAGGTGATACCGGACCGAAAGGTGATACGGGACCTCGAGGGGAAACAGGTCCGGCGGGCCCTCAGGGGCCAACAGGTGCGCGTGGTGAGACAGGTCCTCAGGGTAGTGTCGGCCCGGCAGGTCCGCGGGGTGAGAAAGGCGAGCAGGGGGAGCGTGGACCACAGGGATTACAGGGGCTGAAAGGTGAAACCGGAGAACGTGGACCTCAGGGGGTACAGGGCCCGGCAGGCCCGACAGGAGCAACCGGACCGGCGGGTCCACGGGGTGAACGTGGTGAACAGGGCATACAGGGGCCAGCCGGAGCAACAGGACCTGTTGGGCCACAAGGAGAGCGCGGTATTCAGGGGCCTGCAGGTCCTGCGGGCCCGCGAGGTGAAACCGGAGCCAGAGGTGAAAAAGGAGACCCCGGGGACCCCGGCGGCCCACCGGGACCAAAGGGTGATACCGGACCTGCTGGCCCTGCCGGTGAAAAAGGCGAACCCGGTGAGCGTGGGCCTCAGGGATTACAGGGGCCACCGGGTCCAGCCGGAGAGAGAGGGCCGACAGGCGAAGCCGGACCTGCGGGTCAACCGGGGCCCAAAGGAGACCCGGGTCCTGCTGGCCCACAGGGACCGGCGGGAGAGCGGGGAGCTCAGGGGCCTCAGGGTGTAGCTGGTCCTGTCGGCCCGGCAGGTGCAGCGGGCGCGAAAGGCGATAAAGGTGACCCCGGACCTGCTGGTCCTCAGGGGCAGCCCGGTCCTCAGGGACCTGCTGGCGAAACCGGACCCGCGGGTGAACCCGGGCCAAGAGGTGAGCCCGGTCCACAGGGACTTAAAGGTGACAGGGGCGAGCCAGGACCTACAGGCCCACAGGGACCGGCGGGAGAGCGGGGACCTCAGGGGCCACAGGGTGTAGCTGGTCCTGTCGGCCCTGCAGGCGAACCGGGAGCGAAAGGCGATAAAGGTGACCCCGGAGGAACCGAACTGCTTGCTTCAGCCAATACATGGACTCAACCACAAACTATTAATGGCAATTTGACGGTGACCGGAAACGGCTCATTTAACGATGTTCAGATCCGTTCGGATAAACGTAACAAGCGAAATGCAATACGAATAGATAATTGTCTGGAGAAGCTTGACCTGCTAACGGGTTATTTGTATGAAATACAGAATGCTGATGGCAGTTGGCAACAATCTGTGGGATTATTTGCACAGGATGCGTTAAAGGCTCAACCAGAGTTAGTTACATCTGATACAGATATCATATCTGGAGAAGAGAGATTTCGATTAAATTATAATGGTGTTATTGCACTGTTAGTTGAAGGAATAAAAAATCTGCGTAAAGAGATTAGCGACCTTAAAGAGAAATAA

Tertiary structure

PDB ID
b4556dc894e5b36e1072dba09bfeb32e821699de97f71e7ae31423760ea08532
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6366
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Clinical Isolates of Shiga Toxin 1a-Producing Shigella flexneri with an Epidemiological Link to Recent Travel to Hispaniola Gray,M.D., Lampel,K.A., Strockbine,N.A., Fernandez,R.E., Melton-Celsa,A.R. and Maurelli,A.T. 2014 25271406 GenBank