Protein

View in Explore

Genbank accession

CAB4193434.1 [GenBank]

Protein name

Collagen triple helix repeat

RBP type

Evidence RBPdetect2

Probability 0,96

Protein sequence

MPIQIQLRRGSAAQWTAANSILAQGEIAVELDTGKFKIGSGTQGWNALSYSSGPIGVTGNTGATGATGATGATGATGAQGIQGIQGIQGIQGVVGTAATLAVGTVTTGTVGSSATISNSGTNAAAIFNFSIPVGATGATGATGATGATGTAATISVGTATTGSPGSSVVVSNSGTLAAAVFNFIIPQGATGAVGATGAVGATGAVGATGATGTAATITVGQITTLSPGSSANVTNSGSSSSALLNFNIPQGATGAQGIQGIQGIQGDIGISATVAVGTVTTGIVGSSSTVSNSGTTGAAVLNFSIPTGATGATGTAATIAVGTVTTGSTGSPTTVSNSGTTAAAVLNFSIPTGATGATGATGATGTTGATGPQGISVTLKGTKATAVLLPSSGQQAGDAWIVEADGDLYFWNVSAGTWDNIGQIVGPQGPTGATGTAATIAVGTVLTGITGSSVVVTNSGTSGAATLNFTIPTGATGATGATGATGTAATLAVGTVTTGITGSSATISNSGTTSAAVLDFSIPIGATGATGATGTAATIAVGTITTISSGSSATVSNSGTASAVLLDFSIPQGATGPTGNTGATGATGSTGTTGTAATLAVGTVTTGAAGGAVSVSNSGTSSAATLNFTIPIGDTGATGATGATGNTGTAATLAIGTVTTGTAGSSAIVSNSGTTSAATLNFTIPRGNTGDTGATGATGTAATLAVGTVATGAAGSSTLVSNSGTASAATFNFTIPRGDTGIQGATGNTGATGAAGATGTAATITIGTVITGTVGSSATVTNTGSSSAAVLDFSIPTGATGPQGATGATGATGPQGATGLQGATGPQGPTGPAGLTGDTGAAGTAGAAGAVGPAGATGSQGIQGIQGATGATGATGPQGDTGLTGPAGATGSQGIQGIQGNTGATGLTGPAGAVGPQGDTGLTGATGLTGPAGSQGIQGIQGATGTTGTTGQGIATGGTTGQVLVKLSNTDYDTGWAAQSGGGGGGSSVTVAATAPASPSTGSVWFNTENATMYIWTGTAWVEPSGGVAGPAGPAGSVLKITSISICNSSYTVLDDTAVSNTGGYIKLTGTNFAAGCIVTVGTINATTTTYVSATEVRAQLPATVAGSYTVYLTNTDGGTCFRLNAVTFSAPPVWSTGTYSSPTAVSTQLLATGDSTLTYTLTSGSLPSGITLSSSGLLSGTTTLNSYSFTVTATDAQLQDVSQVISLTIANVPPSAVEYLVVAGGGGGGSAVFNVDNGGGGGAGGYSTSTGFAVASGTPITVTVGAGGATATQGYNSQLGSLTASIGGGRGGTNGSFAGGSGGSGGGGAGVTGYTGGGSATSGQGNIGGNGNGSSWPGGGGGAGAAGGTAGVSPQTTGSGGVGLASSISGTSTYYAGGGGGSGSGATFPNGGNGGGGTGNASGTAGASGTANTGGGGGGGSGSGGAGAGGPGGSGIVIIRYADSYSAAASTTGSPTITNPTGYRVYKWTSSGSITF

Physico‐chemical properties

protein length:	1477 AA
molecular weight:	134552,17350 Da
isoelectric point:	4,20133
aromaticity:	0,04130
hydropathy:	0,22167

Domains

Domains [InterPro]

DC_0435
ATT
1–62

DC_0435 DC_1769 DC_1769 DC_1340 DC_1769 DC_1769 IPR008160 DC_1266 DC_0634

SSF69349
STR
3–156

SSF69349 DC_1769 DC_1479 IPR014756 IPR049304

IPR041352
ATT
5–42

IPR041352 IPR008160 DC_1769 DC_1341 DC_0929

IPR050149
Unmapped
54–759

IPR050149

CAB4193434.1

1 1477

Architecture

ATT

STR

RBD

ATT 1-62 | STR 63-271 | STR 337-567 | STR 592-1027 | STR 1040-1442 | RBD 1443-1477

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Domains [InterPro]

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
DC_0435	ATT	DC_0435	1	62	Novel HMM	DC_0435	N-terminal	Low	Positional only	79 proteins / 79 hits
SSF69349	STR	SSF69349	3	156	Merged direct domain	SSF69349	Central	Low	Positional only	153 proteins / 153 hits
IPR041352	ATT	DC_0533	5	42	InterPro cluster	Major tropism determinant, N-terminal domain	Central	Medium	Text match	295 proteins / 296 hits
IPR008160	STR	DC_0536	52	96	InterPro cluster	Collagen triple helix repeat	C-terminal	High	Text match	355 proteins / 386 hits
IPR050149	Unmapped	-	54	759	InterPro	Collagen superfamily	-	-	-	-
DC_1769	STR	DC_1769	91	151	Novel HMM	DC_1769	Central	Low	Positional only	52 proteins / 52 hits
DC_1769	STR	DC_1769	147	214	Novel HMM	DC_1769	Central	Low	Positional only	52 proteins / 52 hits
DC_1769	STR	DC_1769	207	271	Novel HMM	DC_1769	Central	Low	Positional only	52 proteins / 52 hits
DC_1340	STR	DC_1340	337	567	Novel HMM	DC_1340	Central	Low	Positional only	192 proteins / 192 hits
DC_1769	STR	DC_1769	592	649	Novel HMM	DC_1769	Central	Low	Positional only	52 proteins / 52 hits
DC_1769	STR	DC_1769	643	701	Novel HMM	DC_1769	Central	Low	Positional only	52 proteins / 52 hits
DC_1769	STR	DC_1769	697	762	Novel HMM	DC_1769	Central	Low	Positional only	52 proteins / 52 hits
DC_1479	STR	DC_1479	761	859	Novel HMM	DC_1479	Central	Low	Positional only	21 proteins / 21 hits
IPR008160	STR	DC_0536	797	853	InterPro cluster	Collagen triple helix repeat	C-terminal	High	Text match	355 proteins / 386 hits
DC_1341	STR	DC_1341	842	912	Novel HMM	DC_1341	Central	Low	Positional only	76 proteins / 76 hits
DC_1266	STR	DC_1266	896	1027	Novel HMM	DC_1266	Central	Low	Positional only	66 proteins / 66 hits
DC_0634	STR	DC_0634	1040	1367	Novel HMM	DC_0634	Central	Low	Positional only	16 proteins / 16 hits
IPR014756	STR	IPR014756	1061	1120	Merged direct domain	Immunoglobulin E-set	Central	Low	Positional only	3 proteins / 3 hits
IPR049304	STR	DC_0631	1216	1442	InterPro cluster	Glycine-rich domain	C-terminal	Low	Positional only	225 proteins / 228 hits
DC_0929	RBD	DC_0929	1345	1477	Novel HMM	DC_0929	C-terminal	Low	Positional only	25 proteins / 25 hits

Taxonomy

	Name	Taxonomy ID	Lineage
Phage	uncultured Caudovirales phage [NCBI]	2100421	Uroviricota > Caudoviricetes > Peduoviridae > Maltschvirus maltsch >
Host	No host information

Coding sequence (CDS)

Genbank protein accession

CAB4193434.1 [NCBI]

Genbank nucleotide accession

LR797194 [NCBI]

CDS location

range 52268 -> 56701
strand -

CDS

ATGCCAATACAAATACAACTTAGAAGAGGATCAGCAGCTCAATGGACGGCTGCTAATTCTATACTTGCACAGGGTGAAATAGCTGTAGAGTTAGATACAGGTAAATTTAAAATTGGTAGTGGTACTCAAGGATGGAATGCTTTATCTTATTCTTCGGGACCAATAGGGGTAACAGGAAATACAGGTGCTACGGGTGCCACAGGTGCTACCGGTGCCACAGGTGCTACCGGTGCCCAAGGTATTCAAGGTATTCAAGGTATTCAAGGTATTCAGGGCGTAGTAGGTACTGCAGCTACATTAGCTGTAGGAACAGTTACAACAGGTACTGTAGGTAGTTCTGCTACTATAAGTAATTCAGGCACTAATGCAGCAGCTATTTTTAACTTTAGTATACCCGTAGGTGCTACAGGTGCTACAGGTGCTACAGGTGCTACAGGTGCTACAGGTACAGCAGCTACGATTAGTGTAGGTACTGCTACTACTGGTTCTCCAGGAAGTTCAGTAGTAGTAAGTAATTCAGGTACTTTAGCAGCAGCAGTATTTAATTTTATTATACCTCAAGGTGCTACAGGTGCTGTAGGTGCTACAGGTGCTGTAGGTGCTACAGGTGCTGTAGGTGCTACAGGTGCTACAGGTACAGCAGCTACTATTACTGTTGGACAAATTACTACTCTATCGCCAGGTAGTTCTGCTAATGTTACTAATTCTGGCTCTTCTTCATCAGCACTCTTAAACTTTAATATACCACAGGGTGCTACAGGTGCACAAGGTATCCAAGGTATTCAAGGTATCCAAGGTGATATAGGTATATCTGCTACTGTTGCTGTAGGTACAGTTACAACAGGAATAGTAGGTAGTTCTTCTACTGTAAGTAACTCGGGTACTACTGGAGCAGCTGTTCTTAACTTTAGTATACCCACAGGTGCAACAGGTGCTACTGGTACAGCAGCTACAATAGCTGTAGGTACAGTTACAACAGGGTCAACAGGTAGTCCCACTACTGTAAGTAACTCGGGTACTACTGCAGCAGCTGTTCTTAACTTTAGTATACCCACAGGTGCAACGGGTGCTACAGGTGCTACAGGTGCTACGGGTACTACAGGTGCGACTGGACCACAAGGTATTTCTGTAACTCTTAAAGGTACTAAAGCTACTGCAGTTTTATTACCAAGTTCTGGGCAACAAGCAGGAGATGCTTGGATTGTTGAAGCAGATGGTGATTTGTATTTTTGGAATGTTTCTGCAGGTACATGGGATAATATAGGACAAATAGTAGGGCCACAAGGCCCAACAGGTGCTACAGGTACAGCAGCTACAATAGCTGTAGGAACTGTACTAACAGGTATTACTGGAAGTTCTGTAGTAGTAACTAACTCTGGTACTAGTGGGGCCGCCACTCTTAATTTTACAATCCCTACAGGTGCAACAGGTGCTACGGGTGCTACGGGTGCAACAGGTACTGCAGCTACATTAGCTGTAGGAACAGTTACAACAGGTATTACTGGAAGTTCCGCTACTATTAGTAATTCAGGAACTACTTCAGCAGCCGTTCTAGATTTTAGTATACCTATAGGTGCTACAGGTGCTACAGGTGCTACAGGTACTGCAGCTACAATAGCTGTAGGAACAATTACAACTATATCTTCCGGTAGTTCTGCTACTGTAAGTAATTCAGGTACTGCTTCAGCAGTACTTTTAGATTTTAGTATTCCTCAAGGGGCCACGGGTCCCACAGGTAATACAGGTGCAACAGGTGCTACAGGTTCTACAGGTACTACGGGTACTGCAGCTACATTAGCTGTAGGAACAGTTACAACAGGCGCAGCAGGTGGAGCTGTTTCAGTAAGTAATTCTGGTACTAGTTCTGCAGCAACACTTAATTTTACAATTCCTATAGGTGATACTGGTGCTACAGGTGCCACAGGTGCCACAGGTAATACAGGTACTGCAGCTACATTAGCCATAGGAACAGTTACAACAGGAACTGCAGGTAGTTCTGCTATTGTAAGTAATTCAGGTACTACCTCAGCAGCAACACTTAACTTCACAATTCCTAGAGGAAATACGGGGGATACTGGTGCTACAGGTGCTACAGGTACTGCAGCTACATTAGCCGTAGGAACAGTAGCAACAGGTGCAGCAGGTAGTTCCACTTTAGTAAGTAATTCAGGTACTGCCTCAGCAGCAACATTTAATTTTACAATTCCTAGAGGTGATACAGGTATACAGGGTGCTACAGGTAATACGGGTGCTACAGGTGCAGCAGGTGCTACAGGTACAGCAGCTACAATAACTATAGGTACAGTTATAACAGGGACAGTAGGAAGTTCTGCTACGGTTACTAATACTGGCTCTTCTTCAGCTGCAGTTTTAGATTTTAGTATACCTACAGGTGCTACAGGCCCACAAGGTGCTACAGGTGCTACAGGTGCTACAGGTCCACAAGGTGCTACAGGCCTACAGGGTGCTACAGGTCCACAAGGACCTACAGGACCAGCAGGTCTTACAGGTGATACAGGTGCTGCAGGTACTGCAGGTGCTGCAGGTGCAGTAGGTCCTGCAGGTGCTACAGGTTCTCAAGGTATTCAGGGTATTCAAGGTGCTACAGGTGCTACAGGTGCCACAGGTCCTCAAGGTGATACAGGTCTTACAGGGCCTGCAGGTGCTACAGGTTCTCAAGGTATTCAAGGTATTCAAGGTAATACAGGTGCTACAGGTCTCACAGGTCCTGCGGGTGCTGTGGGACCTCAAGGTGATACAGGTCTTACAGGAGCTACAGGACTTACAGGTCCTGCCGGTTCTCAAGGTATTCAGGGTATTCAAGGTGCTACAGGTACTACAGGTACTACAGGTCAGGGAATTGCTACAGGTGGTACAACTGGACAAGTATTAGTTAAATTATCTAATACTGACTATGATACTGGATGGGCGGCACAGTCTGGTGGTGGGGGAGGGGGATCTTCAGTTACAGTTGCAGCAACTGCACCTGCAAGTCCTTCTACAGGTAGTGTTTGGTTTAATACTGAAAATGCTACCATGTATATTTGGACAGGTACTGCATGGGTAGAGCCTTCTGGAGGGGTAGCCGGCCCTGCCGGCCCTGCGGGTTCTGTACTTAAAATTACTAGTATATCAATATGTAACTCTAGCTATACTGTTTTAGACGATACCGCAGTTAGTAATACTGGCGGATATATTAAATTAACTGGTACAAATTTTGCTGCGGGATGTATAGTTACAGTTGGTACTATTAATGCTACAACTACTACGTATGTAAGTGCTACGGAAGTAAGAGCTCAATTACCTGCTACAGTTGCTGGTTCTTATACGGTATATTTAACTAACACTGATGGGGGTACTTGTTTTAGACTTAATGCAGTCACCTTTAGTGCTCCGCCAGTATGGAGTACTGGAACTTATAGCTCCCCCACAGCGGTTAGTACCCAATTATTAGCTACTGGTGATAGTACATTAACATACACTCTTACTAGTGGTAGTCTACCTAGTGGGATTACATTAAGTAGTAGTGGACTTTTATCAGGAACTACTACATTAAATTCATATTCCTTTACTGTTACAGCTACTGATGCTCAGTTACAAGATGTAAGCCAAGTTATTAGTTTAACTATTGCTAATGTTCCGCCTTCTGCAGTTGAATACTTGGTTGTTGCTGGCGGCGGTGGTGGTGGCTCCGCTGTGTTTAATGTCGATAATGGGGGTGGAGGCGGTGCCGGTGGATATAGTACATCAACCGGATTTGCAGTTGCATCCGGCACTCCAATCACAGTAACGGTTGGGGCCGGGGGTGCAACAGCGACTCAAGGTTACAATTCTCAACTAGGATCTTTAACTGCTTCTATTGGTGGTGGGCGTGGCGGCACCAACGGTAGTTTTGCTGGTGGGTCCGGTGGCTCTGGTGGTGGTGGGGCCGGCGTTACTGGTTATACTGGCGGTGGTAGTGCAACTAGTGGTCAAGGTAATATAGGTGGTAATGGCAATGGAAGTAGTTGGCCTGGTGGTGGGGGTGGTGCTGGTGCTGCTGGAGGCACTGCTGGAGTATCCCCTCAAACAACAGGTTCCGGAGGTGTTGGTTTGGCATCTTCTATTTCTGGAACATCAACTTACTATGCGGGCGGTGGTGGTGGATCTGGTTCAGGCGCAACTTTCCCTAATGGTGGAAATGGGGGTGGCGGCACTGGAAATGCATCTGGTACTGCTGGAGCAAGTGGCACAGCTAATACTGGCGGTGGCGGTGGTGGTGGCAGTGGTAGTGGGGGTGCAGGTGCAGGTGGCCCTGGTGGTTCAGGTATTGTAATCATTCGCTATGCAGATTCATATTCTGCTGCAGCTTCAACTACAGGCTCTCCTACAATTACTAATCCCACGGGATATAGAGTTTACAAATGGACCAGTTCTGGTTCAATAACATTTTAA

Genome Context

Tertiary structure

PDB ID

e360e2c37ac0dc89baf0befd36ec9fb16f4936b2476b4c42f6f1a846d949b671

ColabFold

Source ColabFold

Method ColabFold

Resolution 0,5501

Oligomeric State monomer

Download PDB

Model Confidence

Very high
pLDDT > 90

High
90 > pLDDT > 70

Low
70 > pLDDT > 50

Very low
pLDDT < 50

Protein

Domains

Domains [InterPro]

Domains [InterPro]

Taxonomy

Coding sequence (CDS)

Coding sequence (CDS)

Genome Context

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Model Confidence