Protein

View in Explore
Genbank accession
WBY53978.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,91
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MADYKLSELNSIDTIRSDDLLHVRVKKRPEMLGDEDRRMTYQDFLASFKLERFVQIAGSTMTGDLGIVKLLYGGKAVFDPTGSSEVTIGDVLKTFKINANGLRLTIADASRSATVYHTLNKPSPNELGMRTNEENDARYARLAVTNSFQAKQSVVANGEQLTLKTPAGASEAYSAIVGRNANNDKTWAVGNLTQGSLDVHLENSRGSRITLGAIVSVNKALAITGQVKPSDWSNLDARYFTQTAANQRFAQLTTNNTFTGANTFRDMRVISNSAAVTLQCASANESFYLLGKDYQGGNSWFIGRGSSGTEVTLYNYVSDTSLVLSETARFNKSVEITGQVQPSNWTNIDSRYVPSSLTRVLARTDLTNTFTKAQIISTSNGNLFRLQTTVQDSELYMSAHNADGNRRWWLGIGGAGQTTVALTNDVTKKSINLGTNLDVNTHVNIVGQVRPSDFSNLDDRYYTQSAANSRYMLAGYTGGASEADGSDGVAWNAKTGLYTVSNAAKTYTYLVYNMFSGDGSTPSAQLKFQFQNGGMWYRTSRDAHGFEDNWSKVYTEAQKPKPSDIGAYSKAETDQKIAQAISDSTDLNKIYPVGIVTWFNSNVDPNTALPGLTWTYLNNGVGRTIRIAAANGSDVATTGGSDSVTLAVGNLPSHTHSFSATTSSFDYGTKGTNSTGGHTHSGSGSTSTNGEHTHYIEAWNGTGRGGDKMSSYAVSYRTGGSYTNAAGNHSHTFSFGTSGAGDHSHSVGIGAHSHTVSGNTGGTGSGSAFSVTNQFYKLMAWVRTA
Physico‐chemical
properties
protein length:785 AA
molecular weight: 84380,78030 Da
isoelectric point:8,21658
aromaticity:0,09172
hydropathy:-0,43465

Domains

Domains [InterPro]
DC_1993
STR
101–361
DC_1993 G3DSA:6.20.80.10 IPR022246 IPR053827 IPR005003 IPR005003
IPR048388
ATT
161–248
IPR048388 G3DSA:6.20.80.10 DC_1993
IPR048388
ATT
277–356
IPR048388 IPR048388
WBY53978.1
1 785
Architecture
STR
ATT
STR
ATT
STR
ATT
STR
ATT
STR
STR 101-160 | ATT 161-248 | STR 249-276 | ATT 277-356 | STR 357-380 | ATT 381-474 | STR 475-587 | ATT 588-717 | STR 718-781 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WBY53978.1
1 785
Domain Start End Length (AA) Confidence
N-terminal 1 64 64 0,9926
Central domain 65 263 200 0,1954
C-terminal 264 785 521 0,8750
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-64
Central
65-263
C-terminal
264-785

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage REP10
[NCBI] 		3022452 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WBY53978.1 [NCBI]
Genbank nucleotide accession
OQ174509.1 [NCBI]
CDS location
range 36460 -> 38817
strand +
CDS
ATGGCAGATTACAAGTTGAGTGAATTAAACTCAATCGATACAATCCGTTCAGATGACCTTCTTCATGTCAGGGTTAAAAAGAGACCTGAAATGCTAGGTGATGAAGACCGTCGAATGACCTATCAAGATTTCTTAGCATCTTTTAAGCTTGAAAGATTTGTTCAGATTGCTGGTAGTACTATGACGGGTGACTTAGGGATTGTTAAGTTACTTTATGGTGGTAAGGCAGTCTTTGACCCAACAGGCTCTTCTGAGGTTACTATTGGGGATGTTTTAAAGACTTTTAAAATCAACGCAAATGGTCTTAGACTAACTATTGCAGATGCTTCAAGGTCAGCAACTGTTTATCATACTCTGAATAAACCAAGTCCTAATGAACTTGGGATGAGAACTAATGAAGAGAATGATGCAAGATATGCAAGACTTGCTGTTACAAACTCATTCCAAGCTAAACAGAGTGTCGTAGCAAATGGTGAGCAGTTGACACTGAAGACCCCTGCGGGTGCAAGTGAGGCATACTCCGCTATTGTAGGTCGAAATGCCAATAATGATAAAACTTGGGCTGTTGGTAATCTAACTCAAGGAAGTCTTGATGTTCATCTCGAAAATAGCAGAGGTTCAAGAATCACTCTAGGTGCAATTGTGTCTGTTAATAAGGCTCTTGCTATTACTGGTCAGGTTAAACCCTCTGATTGGTCTAACTTAGATGCTAGATACTTTACTCAGACAGCAGCTAATCAGAGATTTGCACAGTTAACTACGAATAACACTTTCACAGGCGCTAATACATTTAGGGATATGCGTGTTATCTCGAATTCTGCTGCTGTTACACTACAATGTGCATCAGCAAATGAATCATTTTATCTACTTGGAAAAGATTATCAAGGTGGTAACTCATGGTTTATTGGTAGAGGTAGTTCTGGAACAGAGGTTACACTCTATAACTATGTTAGTGATACATCTTTAGTGTTGTCTGAGACGGCAAGATTTAATAAGTCTGTAGAAATCACTGGTCAAGTACAACCTTCTAATTGGACTAACATTGATTCAAGGTATGTTCCGAGTTCTCTGACAAGAGTTCTTGCAAGGACTGATTTAACTAATACTTTCACTAAAGCACAGATTATCTCTACTAGCAACGGCAACCTTTTTAGACTACAGACAACAGTACAAGATTCTGAACTCTACATGTCTGCACATAATGCTGATGGGAACAGGAGATGGTGGTTGGGTATTGGTGGTGCTGGTCAAACCACAGTGGCACTTACCAATGATGTAACAAAAAAGTCAATCAATCTTGGTACTAATTTAGATGTGAATACACATGTGAATATTGTTGGGCAAGTAAGACCAAGTGATTTCTCTAACTTAGACGATAGATACTACACCCAATCTGCCGCAAACTCTAGGTATATGCTTGCAGGTTATACTGGTGGAGCTTCAGAAGCAGATGGTAGTGATGGTGTTGCATGGAATGCAAAAACAGGATTATACACTGTCTCCAACGCAGCTAAGACGTATACTTACCTTGTGTATAACATGTTTTCGGGGGATGGTTCCACACCATCTGCACAATTAAAATTTCAGTTTCAAAATGGTGGGATGTGGTATAGGACATCAAGAGATGCCCATGGCTTCGAAGATAACTGGTCTAAAGTTTACACGGAAGCACAAAAACCAAAACCTTCAGATATTGGTGCATACTCTAAAGCAGAAACTGACCAGAAGATTGCACAGGCAATTAGTGACTCTACAGACCTTAACAAAATCTATCCAGTAGGCATTGTAACGTGGTTTAACAGTAATGTTGACCCTAATACAGCACTTCCTGGGTTAACTTGGACGTACCTGAACAATGGTGTTGGTAGAACTATCAGAATTGCAGCAGCAAACGGTTCAGATGTTGCTACAACTGGTGGTTCAGATTCTGTGACGTTAGCTGTTGGTAACTTACCATCACACACCCATAGTTTCTCTGCTACCACTTCATCTTTTGATTATGGTACGAAGGGAACTAACAGTACGGGTGGGCACACTCACTCTGGTAGTGGTTCTACTAGCACAAATGGTGAGCACACTCACTACATTGAGGCGTGGAATGGTACTGGTAGAGGTGGTGATAAGATGTCATCATATGCCGTATCATACAGGACGGGTGGGAGTTATACTAATGCAGCAGGGAACCACAGTCATACTTTCTCTTTTGGGACTAGCGGTGCTGGCGACCATTCCCACTCTGTAGGCATTGGTGCTCACAGCCACACAGTTAGTGGTAACACTGGTGGTACAGGTTCTGGTTCAGCATTTAGTGTTACTAACCAGTTCTACAAGCTAATGGCTTGGGTGAGAACTGCTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
bf3918373d5e02bdfeb905004293409be191eed6d18e2b955cc6a1e09107b456
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6813
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Swapped genetic code blocks viral infections and gene transfer Nyerges,A., Vinke,S., Flynn,R., Owen,S.V., Rand,E.A., Budnik,B., Keen,E., Narasimhan,K., Marchand,J.A., Baas-Thomas,M., Liu,M., Chen,K., Chiappino-Pepe,A., Hu,F., Baym,M. and Church,G.M. 2022 — GenBank