Protein

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Genbank accession
ABY63044.1 [GenBank]
Protein name
virion structural protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MYELVRARYRRDRRDGRWAEADLADEPIGTLSANYGDIYLYIEYPGAGSPVLKALHWSNVEYTLNGVDPMLTVQQWLTSIGNKTLPFDAQLPNEKLRLVKYAQAWHCGYDIQAAPANGHIDQDISVHYKDDLVLTHPKFKPQVIRDNCLISVNGYFHLTDWTVNGVRIIDGNKTVLRSNDNQIGLYSFETIGKLKFVPITDEMIIASSEDTPLWDATYLKLPSDVDIKDKTVLLVTGGYLNVLSDVYERVNDNTWRLSFGRMMFLNRYIQSVKDMDLSSLGLESDPDSETLFNAQQLKDDSVIRAYLKLSQSFFVIVDSPTFFQSFEPVQYLNEPGRFIDGKQEQLPMVGAYGKMLDYHIIKEPGMAKSQLAPTVEQLYVYCATMNQRNNYDAHHRPWLQQKAVNGGRYPAQPVKNETAYFRIIGVEG
Physico‐chemical
properties
protein length:428 AA
molecular weight: 48880,82830 Da
isoelectric point:5,44622
aromaticity:0,11215
hydropathy:-0,36425

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
ABY63044.1
1 428
Domain Start End Length (AA) Confidence
N-terminal 1 120 120 0,9006
Central domain 121 319 200 0,1929
C-terminal 320 428 108 0,8018
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-120
Central
121-319
C-terminal
320-428

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage 201phi2-1
[NCBI] 		198110 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pseudomonas chlororaphis
[NCBI] 		587753 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pseudomonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ABY63044.1 [NCBI]
Genbank nucleotide accession
EU197055 [NCBI]
CDS location
range 146838 -> 148124
strand -
CDS
ATGTACGAATTAGTACGGGCAAGATACCGCCGAGATCGACGCGACGGTCGCTGGGCCGAGGCTGATTTGGCTGACGAGCCAATCGGTACGCTCTCTGCAAACTATGGTGATATCTATTTGTACATCGAGTACCCAGGAGCAGGTAGCCCTGTATTAAAGGCACTGCACTGGTCGAATGTGGAATACACTTTAAATGGTGTTGACCCTATGCTGACTGTACAACAATGGTTGACTTCTATTGGTAACAAAACACTTCCATTTGATGCACAGCTACCCAACGAGAAACTTCGTTTGGTTAAGTATGCACAAGCCTGGCATTGTGGTTACGATATTCAAGCCGCTCCAGCCAATGGTCATATTGACCAAGATATCTCCGTTCACTATAAAGATGACTTAGTGTTAACTCATCCTAAGTTTAAGCCACAGGTAATCCGTGATAACTGTTTGATCTCAGTAAATGGTTATTTCCATTTAACTGACTGGACTGTAAATGGCGTAAGGATTATCGATGGTAACAAAACAGTACTAAGGTCTAATGATAACCAGATTGGTTTATACTCATTTGAAACGATTGGTAAATTAAAGTTTGTTCCAATTACTGATGAAATGATTATCGCTTCTTCTGAAGACACTCCTCTTTGGGACGCTACATATTTGAAACTACCAAGTGATGTCGATATCAAAGACAAAACGGTGTTGTTGGTAACAGGCGGTTACCTTAACGTACTCTCAGATGTTTACGAGCGGGTTAATGATAATACCTGGCGTCTAAGCTTCGGCCGAATGATGTTCCTTAATCGGTATATTCAATCGGTTAAAGATATGGACCTCAGTAGCTTAGGGCTTGAATCAGATCCCGATAGTGAAACGTTATTCAATGCACAGCAGTTAAAAGATGATTCCGTCATTAGGGCTTACCTTAAACTGAGTCAGAGTTTCTTTGTTATTGTTGATTCCCCAACGTTCTTCCAATCTTTCGAACCAGTTCAGTATCTTAATGAACCTGGTCGATTCATTGATGGTAAGCAAGAGCAACTGCCGATGGTAGGGGCTTACGGTAAGATGCTAGATTATCACATCATCAAAGAACCCGGTATGGCCAAGAGTCAGTTAGCTCCAACAGTAGAGCAGTTATATGTGTACTGTGCGACCATGAACCAACGTAATAACTACGATGCTCATCACCGCCCATGGTTACAACAGAAAGCTGTAAACGGTGGACGCTACCCGGCTCAGCCAGTTAAGAACGAGACTGCTTACTTCCGTATTATCGGAGTAGAAGGTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
a16d6301a1111c7324de6aefca8d313d2690395ac9959cf3119a077d69a37f46
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,2637
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50