Protein

View in Explore

Genbank accession

YP_007392677.1 [GenBank]

Protein name

tail fiber protein

RBP type

Evidence RBPdetect

Probability 0,90

Evidence RBPdetect2

Probability 0,96

Protein sequence

MAQYEDKVVEVLVTVPDPSTSTSGGSGAPFTGIETQDTVSTTLIGDGTQSSPLQANVNVSHRTGNRLQVVSGSSEQGLYVASSDTKVSAKDGNTVTYISAQDAANAGNPTLEGVYSDPVNVSTTSPKKTLEIKADPTGKAKTQVDVIISPDTANALKIGTDGLTVPVSVAQDNTLEIRQGALYVRPQETKISTDPDNKVEERSDGIFVGTVKGDKGDTGATGATGPAGPEGPIGPQGPEGPQGPQGEKGDTGDTGAVGATGPAGAQGARGPEGPKGPAGIGINVIDQLDDVSQLPSVAEMELGDTYVIGQNFWTVVSESNVKQWRNIGNFAGPEGLSAYEVAENAGFVGTVDEWLESLKGADGIGLQILGAFPDPSFLPMEGNNPGDGYIIQDMMYVWTGDTDKWQTVGQIGPEGKSAYQVWLDNGHTGSQVDFLNSLIGPQGPKGDKGDKGDTGTDGKNANAVNILGKVADEASLPAGADAGDAYLIGANVWVSTGNDNWEDLGAFQGPVGDTGATGPAGPKGDTGAQGPTGKDNYALAVENGFVGSLNEYLASLKGAKGDTGPTGPRGNTGLKGDKGDTGEGLAILGTKDSEADLPADPVTGDAWLIGDDLYIFDGTEWKNGGPVRGPKGDTGATGPAGAKGDQGDAGPAGAKGDTGDQGPIGPEGPQGTGLSPKGTVATVADLPTSDNTKGDFWSVEEDGNGYAWDGLQWVNTGLTRGETGPAGPTGPQGPKGDKGDPGDPGADGTNGAGVIPKGTVTSEATLPPTGNAVGDYYVTEDTGTGFSWNGTAWVNMGVVRGPQGPQGIQGETGEQGPQGVKGDTGPTGEQGPQGDMGPGVEIIGKLDSSSELPPTGTLGQGYLIDGDFWGWTGSTYENLGRIQGPVGPTGPTGDAGPQGPQGVKGDKGDQGSLWIVFARDPGPADGRVGDNFLNSSTLEFFRKTSATVWGSLGHMGGGNVYDAPKDGKQYTRIDGDWTALSVLEAPTDSGYYVRVNGAWQKLDRYDLRVMSATGELDASVSNVFTVDGTTSKAITISNLPAGRAMTVVVKFLGKGGFMTWPSPMAWSNDTQPALGTTRTILTFFWDGTDLTGVQAMTID

Physico‐chemical properties

protein length:	1099 AA
molecular weight:	112042,98200 Da
isoelectric point:	4,24442
aromaticity:	0,06460
hydropathy:	-0,47780

Domains

Domains [InterPro]

DC_1512
ATT
1–89

DC_1512 DC_0915 DC_1340 DC_0114

IPR050149
Unmapped
212–912

IPR050149 G3DSA:6.20.230.10

IPR008160
STR
222–277

IPR008160 G3DSA:1.20.5.320 G3DSA:1.20.5.320

DC_1340
STR
534–652

DC_1340

YP_007392677.1

1 1099

Architecture

ATT

STR

RBD

STR

RBD

ATT

RBD

ATT 1-89 | ATT 118-415 | STR 424-652 | RBD 653-720 | STR 721-784 | RBD 785-957 | ATT 958-983 | RBD 984-1098 |

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Domains [InterPro]

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
DC_1512	ATT	DC_1512	1	89	Novel HMM	DC_1512	N-terminal	Low	Positional only	27 proteins / 27 hits
DC_0915	ATT	DC_0915	118	415	Novel HMM	DC_0915	N-terminal	Low	Positional only	48 proteins / 48 hits
IPR050149	Unmapped	-	212	912	InterPro	Collagen superfamily	-	-	-	-
IPR008160	STR	DC_0536	222	277	InterPro cluster	Collagen triple helix repeat	C-terminal	High	Text match	355 proteins / 386 hits
DC_1340	STR	DC_1340	424	549	Novel HMM	DC_1340	Central	Low	Positional only	192 proteins / 192 hits
G3DSA:1.20.5.320	STR	G3DSA:1.20.5.320	507	554	Merged direct domain	G3DSA:1.20.5.320	Central	Low	Positional only	67 proteins / 67 hits
DC_1340	STR	DC_1340	534	652	Novel HMM	DC_1340	Central	Low	Positional only	192 proteins / 192 hits
DC_0114	RBD	DC_0114	643	1098	Novel HMM	DC_0114	C-terminal	Low	Positional only	42 proteins / 42 hits
G3DSA:1.20.5.320	STR	G3DSA:1.20.5.320	721	784	Merged direct domain	G3DSA:1.20.5.320	Central	Low	Positional only	67 proteins / 67 hits
G3DSA:6.20.230.10	ATT	G3DSA:6.20.230.10	958	983	Merged direct domain	G3DSA:6.20.230.10	N-terminal	Low	Positional only	46 proteins / 46 hits

Taxonomy

	Name	Taxonomy ID	Lineage
Phage	Pectobacterium phage phiTE [NCBI]	1116482	Uroviricota > Caudoviricetes > Vequintavirinae > Certrevirus phiTE >
Host	Pectobacterium atrosepticum SCRI1043 [NCBI]	218491	Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacteriales > Enterobacteriaceae > Pectobacterium

Coding sequence (CDS)

Genbank protein accession

YP_007392677.1 [NCBI]

Genbank nucleotide accession

NC_020201 [NCBI]

CDS location

range 116385 -> 119684
strand +

CDS

ATGGCACAATATGAAGATAAGGTCGTTGAAGTTCTGGTGACTGTACCAGATCCTTCTACGAGCACCTCTGGCGGGTCTGGTGCCCCGTTCACGGGGATCGAGACTCAAGACACGGTATCTACCACTCTGATCGGTGATGGTACTCAATCCTCCCCTCTCCAAGCCAACGTAAACGTATCCCACCGTACAGGGAACCGCCTGCAAGTAGTCAGCGGCTCCAGTGAGCAGGGTCTTTATGTTGCCAGTTCTGACACAAAGGTTTCTGCTAAAGACGGAAACACCGTAACGTACATCTCCGCGCAGGATGCAGCTAACGCTGGAAACCCGACACTGGAAGGTGTATACTCCGATCCTGTGAATGTGTCAACCACGTCCCCGAAGAAGACTCTGGAAATCAAAGCCGACCCAACTGGAAAGGCCAAGACCCAGGTTGATGTGATCATCTCACCTGACACAGCCAACGCCCTGAAAATCGGCACAGACGGGTTGACCGTCCCTGTGTCTGTTGCACAGGACAACACACTCGAAATCCGCCAAGGCGCACTGTACGTTCGCCCGCAAGAGACCAAAATCTCCACTGATCCCGACAACAAGGTCGAAGAGCGATCTGACGGCATTTTTGTTGGAACCGTGAAGGGCGATAAAGGGGATACCGGGGCTACTGGTGCAACAGGCCCAGCAGGTCCAGAAGGTCCGATCGGCCCACAGGGTCCAGAGGGTCCTCAAGGCCCGCAGGGTGAGAAGGGTGACACCGGAGACACCGGTGCAGTGGGTGCCACTGGCCCGGCAGGTGCTCAAGGTGCTCGTGGCCCTGAAGGTCCAAAAGGTCCTGCTGGTATCGGTATTAACGTTATCGATCAACTGGACGATGTTTCTCAGCTTCCTTCTGTTGCGGAAATGGAACTGGGTGACACCTATGTCATCGGGCAAAACTTCTGGACGGTTGTGAGTGAATCCAACGTCAAGCAGTGGCGCAACATCGGTAACTTCGCAGGGCCTGAAGGTCTGTCTGCATATGAAGTTGCAGAGAACGCTGGCTTCGTGGGAACTGTGGACGAATGGCTGGAATCCCTGAAAGGGGCCGACGGCATCGGTCTCCAGATCCTGGGTGCATTCCCAGATCCATCTTTCCTGCCTATGGAAGGCAACAATCCGGGCGACGGCTACATCATCCAAGACATGATGTATGTGTGGACAGGTGATACTGACAAGTGGCAAACTGTTGGTCAGATCGGCCCTGAAGGTAAATCTGCGTATCAGGTTTGGCTGGATAACGGTCACACTGGTTCCCAGGTTGACTTCCTGAACTCCCTGATTGGCCCTCAAGGTCCGAAAGGCGACAAAGGGGACAAAGGCGACACCGGGACCGACGGTAAGAATGCCAACGCCGTAAACATCCTCGGTAAGGTTGCTGACGAAGCAAGCCTGCCAGCGGGTGCAGATGCAGGTGATGCATACCTGATCGGTGCCAACGTCTGGGTGTCTACCGGGAATGACAACTGGGAAGACCTCGGCGCGTTCCAAGGCCCTGTCGGTGACACCGGAGCCACTGGCCCAGCAGGACCTAAAGGCGACACTGGCGCACAAGGCCCGACTGGTAAGGACAACTACGCCCTTGCGGTAGAGAACGGTTTCGTAGGCTCCCTGAACGAATACCTCGCCTCACTGAAAGGTGCGAAGGGTGACACTGGCCCAACTGGTCCTCGTGGTAACACAGGTCTGAAGGGCGACAAAGGTGACACCGGGGAAGGATTGGCGATCCTCGGAACCAAAGACAGTGAAGCAGATCTTCCTGCCGATCCTGTCACTGGTGACGCATGGCTGATCGGGGACGATCTGTACATCTTCGACGGCACAGAGTGGAAGAATGGTGGCCCAGTCCGTGGTCCTAAAGGTGACACCGGAGCCACTGGCCCGGCGGGCGCTAAAGGCGACCAAGGCGATGCCGGACCTGCGGGAGCCAAGGGCGACACGGGTGATCAAGGCCCAATCGGACCGGAAGGTCCGCAAGGGACTGGCCTGTCTCCGAAAGGTACTGTTGCTACTGTAGCAGACCTGCCAACTTCTGACAACACCAAAGGAGACTTCTGGTCTGTTGAGGAAGATGGTAACGGCTACGCATGGGATGGTTTGCAGTGGGTTAACACGGGACTTACTCGTGGTGAAACTGGCCCTGCTGGCCCTACAGGACCGCAAGGCCCTAAAGGTGACAAAGGTGATCCGGGTGACCCAGGGGCCGACGGAACCAACGGTGCAGGGGTTATCCCGAAAGGAACTGTAACCTCTGAAGCCACTCTCCCTCCAACCGGAAACGCTGTTGGTGACTACTACGTCACAGAAGACACCGGAACAGGCTTCTCTTGGAACGGCACGGCATGGGTAAACATGGGCGTTGTCCGTGGCCCACAAGGCCCGCAGGGAATCCAAGGCGAGACGGGTGAACAAGGTCCGCAGGGTGTCAAGGGTGACACTGGCCCAACTGGTGAACAAGGTCCGCAGGGTGACATGGGGCCGGGTGTTGAGATCATCGGTAAGCTGGACAGTTCTTCAGAACTTCCTCCAACCGGGACGCTGGGACAAGGCTACCTGATCGACGGCGACTTCTGGGGGTGGACTGGCTCTACCTACGAAAACCTCGGACGTATCCAAGGTCCAGTTGGCCCTACTGGTCCAACAGGTGACGCTGGCCCACAAGGTCCGCAGGGTGTGAAAGGCGACAAGGGTGACCAAGGTTCCCTGTGGATCGTGTTCGCACGTGATCCGGGTCCTGCCGATGGTCGTGTCGGTGACAACTTCCTGAACTCTTCCACTCTGGAGTTCTTCCGTAAGACCAGTGCAACGGTCTGGGGTTCTCTGGGACACATGGGCGGCGGTAACGTCTATGATGCACCGAAGGATGGTAAGCAGTACACCCGTATCGACGGCGACTGGACGGCCCTCTCCGTCCTGGAAGCGCCTACCGACTCTGGCTACTACGTCCGTGTGAACGGAGCGTGGCAGAAGTTGGATCGTTACGACCTGCGTGTCATGTCCGCAACTGGCGAACTGGATGCTTCTGTATCCAACGTGTTCACCGTTGACGGAACCACGTCTAAGGCAATCACCATCTCCAACCTGCCAGCGGGTCGTGCGATGACTGTGGTTGTTAAGTTCCTCGGTAAAGGTGGGTTCATGACTTGGCCTTCTCCGATGGCATGGTCTAACGACACCCAGCCAGCACTTGGTACTACCCGTACCATCCTGACGTTCTTCTGGGACGGAACGGACCTGACTGGTGTTCAGGCAATGACTATAGACTAA

Genome Context

Tertiary structure

PDB ID

4a4e3df1e25ccd4e2c72bf0ae4fcbce65438a22b29c8d4cc7d37a64e00ce0fff

ColabFold

Source ColabFold

Method ColabFold

Resolution 0,3048

Oligomeric State monomer

Download PDB

Model Confidence

Very high
pLDDT > 90

High
90 > pLDDT > 70

Low
70 > pLDDT > 50

Very low
pLDDT < 50

Literature

Title	Authors	Date	PMID	Source
Escape from toxin-antitoxin mediated abortive infection can occur by recombination within a generalized transducing phage of Pectobacterium atrosepticum	Blower,T.R., Evans,T.J., Przybilski,R., Fineran,P.C. and Salmond,G.P.C.	2023-06	—	GenBank

Protein

Domains

Domains [InterPro]

Domains [InterPro]

Taxonomy

Coding sequence (CDS)

Coding sequence (CDS)

Genome Context

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Model Confidence

Literature