Protein

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Genbank accession
APD18153.1 [GenBank]
Protein name
GDSL-like Lipase / SGNH-Hydrolase
RBP type
TSP
Evidence RBPdetect
Probability 0,84
Protein sequence
MYSGNMRTITTSGVTTLKADAERVGFRVDMISDGTVEFGDGGGKVPVKAGSFYEPLVCPIGNITIESAGGYVITFREGADVSDVNSGSEPVRVLLEKQLIKLVAFGDSFTDNGDSTRQANGSYSISTAGYWGWLWGMSSQEFEMLDGLGVTGNQTRDILARVPSVLATDADVVVLMGGTNDLNAGETPEFARDGMRQVLDALIAGGKYVLLVPVAHRRMTDGLNTKIDTLNELYAELVAERSDRVVMAKSSEAFNALSAANSREATTDGLHPTGYGASLIASEAVKTLDAHFKSLPLVRTNYAPNPDLAGVSGVLYSGATGQVPDDWRLYFADPTNDGSSLGVGGVVGGDGTVTLRSGNSTTVANAAKAFFRTGDVIVPQGGEWSFELEVTCAYTGNAVQHKVYMSCSDPARGIVEFQGSRFSELMNFNKFRMRTPYQDIGTATKVQLYYLVETDGTGVIESVVAKPRLVKKP
Physico‐chemical
properties
protein length:473 AA
molecular weight: 50402,01630 Da
isoelectric point:4,89221
aromaticity:0,08245
hydropathy:-0,10677

Domains

Domains [InterPro]
IPR051532
Unmapped
54–293
IPR051532 DC_2046
IPR036514
STR
89–294
IPR036514
SSF52266
STR
100–289
SSF52266
IPR036514
STR
100–294
IPR036514
cd00229
ENZ
102–281
cd00229
IPR013830
ENZ
104–276
IPR013830
APD18153.1
1 473
Architecture
STR
RBD
STR 89-294 | RBD 297-473
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
APD18153.1
1 473
Domain Start End Length (AA) Confidence
N-terminal 1 97 97 0,6928
Central domain 98 296 200 0,4787
C-terminal 297 473 176 0,9934
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-97
Central
98-296
C-terminal
297-473

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage JSF7
[NCBI] 		1292086 Uroviricota > Caudoviricetes > Autographivirales > Tawavirus JSF7 >
Host Vibrio cholerae
[NCBI] 		666 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
APD18153.1 [NCBI]
Genbank nucleotide accession
KY065149 [NCBI]
CDS location
range 20445 -> 21866
strand -
CDS
ATGTACTCAGGCAATATGAGAACAATCACTACATCTGGGGTCACAACACTTAAAGCCGACGCAGAGCGCGTCGGCTTCCGAGTGGATATGATTTCAGACGGTACTGTTGAGTTTGGGGACGGCGGTGGTAAGGTGCCAGTAAAAGCTGGTAGCTTCTACGAGCCGTTGGTATGCCCTATAGGCAACATAACCATAGAATCGGCAGGTGGTTACGTAATCACGTTCAGAGAAGGCGCAGATGTGTCTGATGTGAACTCTGGCAGCGAGCCTGTACGCGTGTTACTGGAGAAGCAGCTAATAAAGTTAGTGGCATTCGGTGACAGCTTCACAGATAATGGTGACAGCACGCGTCAAGCTAACGGTAGCTACTCTATCAGCACAGCCGGATACTGGGGATGGTTGTGGGGTATGAGCAGCCAAGAGTTTGAAATGCTGGATGGTCTAGGCGTTACTGGCAACCAGACACGAGACATACTAGCGCGTGTGCCTTCTGTGTTGGCTACTGACGCTGACGTAGTAGTGTTAATGGGTGGTACTAACGACCTTAACGCAGGTGAGACGCCAGAGTTTGCACGCGATGGTATGCGGCAAGTGCTGGATGCGCTAATTGCGGGCGGAAAATACGTGCTGCTAGTACCAGTAGCCCACCGTCGTATGACGGATGGGCTTAACACCAAGATAGACACGCTGAATGAGTTGTACGCAGAGCTAGTGGCAGAGCGTAGCGACAGAGTTGTTATGGCAAAGTCGTCAGAGGCATTCAACGCACTATCCGCGGCTAACAGTCGTGAAGCAACAACGGACGGTCTTCATCCAACAGGGTATGGAGCATCACTGATAGCCTCAGAAGCTGTGAAGACCCTTGACGCCCACTTCAAATCTTTACCACTAGTTCGTACTAACTACGCACCAAACCCAGACCTAGCAGGAGTAAGTGGCGTGTTGTACAGTGGGGCTACGGGGCAAGTACCAGATGACTGGCGACTATACTTTGCTGACCCTACTAACGATGGCTCTAGCTTAGGGGTAGGTGGCGTGGTAGGAGGGGACGGCACTGTGACTTTGCGCAGTGGTAATAGTACCACAGTAGCCAATGCTGCCAAGGCGTTCTTCCGTACAGGGGATGTAATAGTACCACAGGGTGGCGAGTGGAGCTTTGAACTAGAAGTGACCTGCGCGTACACAGGCAATGCGGTACAGCACAAGGTGTACATGAGTTGTAGCGACCCTGCGCGTGGTATCGTAGAGTTCCAAGGTAGCCGATTTTCTGAACTAATGAATTTCAACAAGTTTAGAATGCGAACACCGTATCAAGATATAGGCACTGCGACAAAGGTACAATTGTACTACCTCGTAGAAACAGATGGTACAGGTGTAATCGAGTCAGTGGTAGCCAAACCTCGTTTAGTAAAGAAGCCATAG

Genome Context

Genome Context

Tertiary structure

PDB ID
575c58bbf111a1dbd836867a222568586e1f060ec1feb8e2323c0a9edbaf4196
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7985
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50