Protein

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Genbank accession
WMM34952.1 [GenBank]
Protein name
receptor-binding protein
RBP type
TSP
Evidence DepoScope
Probability 0,89
TSP
Evidence RBPdetect
Probability 0,86
Protein sequence
MSFFAGKFSDGKTVLSLNAANGGDINQHYSPNTNSIFHSDMPFVLVDGTYEAALGDVGNGYFVTQMPWDIINIKSNDPGRVILTAIEINGTHRGFLNGTQSQVGQMLNFFEDQPRAGAELALTSAFAIGDSLAHGTYTYNGNLGHEESIARQGTGGTLLQSSGFQIYRPGGVSAGEAIARAWALIGFPSGVSVPPLDAANADYWDPNWQAPIGSAGRGHDWFYVCSSNIRGFAGKKGVLPDNVNVLYQSPAYPEKIYVCRGSTSNMAAQATRKVYVQDWYNVTPTKVIWYVLNLRYSNGSMGVSGNPFTGSDILISPSNFTIKGVSLPNTGYKFINQNAFGNLGYRPDMEYVGNNAAYTGVFGDNTARCEFIGSSNGGLWSPVNYGGAASQISLYKFGVGKQWYVDTNTNSIGNEHGPVWSPSTVPLRLFPSNVVSTYVGNDLNPSYPAAGDYYQPLATVWLGLPNTNSTIILTTEVIMGNINTAGQRVSTYSGQAWRVQGRRQQSYTAGDGIFHQILTLPPGYLVPYHSTTSYSYTQTWASRPDEMAFRRNGYIYTIKNLGNGNVELGVVIHAAEPAAIFLPRLRVTVQRLT
Physico‐chemical
properties
protein length:593 AA
molecular weight: 64291,99830 Da
isoelectric point:6,79637
aromaticity:0,12142
hydropathy:-0,21130

Domains

Domains [InterPro]
IPR059609
RBD
1–593
IPR059609
WMM34952.1
1 593
Architecture
RBD
RBD 1-593
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WMM34952.1
1 593
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,5455
Central domain 11 246 237 0,9823
C-terminal 247 593 346 0,7393
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-246
C-terminal
247-593

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage EH1
[NCBI] 		2986506 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella typhimurium
[NCBI] 		90371 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WMM34952.1 [NCBI]
Genbank nucleotide accession
OR413342 [NCBI]
CDS location
range 105712 -> 107493
strand -
CDS
ATGAGTTTTTTCGCAGGAAAATTTAGTGATGGTAAAACTGTATTATCTCTAAACGCTGCTAATGGTGGTGATATAAATCAGCACTACTCTCCAAATACTAATAGTATCTTCCACTCAGATATGCCATTTGTCCTAGTTGATGGGACTTACGAGGCTGCTCTAGGTGATGTAGGTAATGGGTATTTTGTTACTCAGATGCCTTGGGATATTATAAACATTAAATCCAATGATCCTGGTAGAGTTATATTAACTGCTATTGAGATAAACGGTACTCATCGTGGATTTCTGAATGGTACTCAATCTCAGGTTGGCCAGATGCTAAACTTTTTTGAAGATCAACCACGTGCTGGAGCTGAGTTAGCTCTAACTTCTGCCTTTGCAATCGGTGATAGTCTAGCTCATGGTACTTATACATATAATGGTAATCTTGGTCATGAGGAATCTATTGCTCGGCAAGGAACTGGAGGTACTTTACTACAGTCTTCAGGTTTCCAGATCTATAGGCCTGGTGGTGTTTCCGCTGGTGAAGCCATTGCCAGAGCCTGGGCTCTTATTGGGTTTCCTTCAGGAGTTTCAGTACCTCCTCTAGACGCAGCAAATGCAGATTATTGGGATCCTAATTGGCAAGCACCTATTGGATCTGCTGGCAGAGGGCATGATTGGTTTTACGTTTGTAGTTCCAATATTCGTGGCTTTGCCGGTAAAAAAGGTGTACTGCCAGATAACGTAAACGTTCTTTACCAATCTCCTGCATATCCAGAAAAAATATATGTTTGTAGAGGTTCTACTTCTAATATGGCTGCTCAAGCCACTAGAAAGGTATATGTACAGGACTGGTATAACGTTACGCCAACTAAGGTTATTTGGTATGTACTAAATCTGCGCTATTCTAATGGTAGTATGGGAGTTTCTGGTAATCCATTTACCGGTTCAGATATCTTAATATCCCCCTCTAACTTTACTATTAAAGGTGTTAGCCTACCAAATACAGGATATAAATTTATTAACCAGAATGCTTTCGGAAACTTAGGCTATCGTCCTGATATGGAGTATGTTGGTAATAACGCTGCGTATACCGGAGTTTTTGGTGATAATACTGCACGATGTGAATTTATCGGCTCTAGTAATGGCGGGTTGTGGTCTCCTGTTAACTATGGGGGTGCAGCTTCTCAAATTAGCTTATATAAATTTGGCGTAGGTAAACAATGGTATGTAGACACTAATACCAACTCCATTGGTAATGAACATGGACCTGTATGGAGTCCTAGTACAGTACCTTTAAGGTTATTCCCTAGCAATGTTGTCAGTACTTATGTTGGGAATGACCTCAATCCATCTTATCCTGCAGCAGGTGATTACTACCAGCCTTTAGCAACAGTCTGGTTAGGACTGCCTAACACCAACTCTACTATCATATTAACTACCGAAGTTATTATGGGCAACATTAACACTGCGGGACAACGTGTTAGTACATACAGTGGGCAGGCCTGGCGTGTACAAGGTAGACGCCAACAGAGTTACACTGCGGGGGACGGTATATTTCACCAAATCCTTACCTTACCGCCTGGCTATCTGGTACCATATCACAGTACAACTTCCTATAGCTATACCCAAACGTGGGCTAGTAGACCTGATGAGATGGCCTTTCGTAGGAATGGATATATTTATACTATTAAAAACCTTGGTAATGGTAATGTTGAGTTGGGTGTTGTCATTCATGCTGCAGAACCAGCTGCTATCTTCTTACCAAGACTACGTGTAACAGTTCAACGCCTAACCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
0ea2615232f46ed602227b6c4c1e531fb41551b3d86845b7613f4bab21e78922
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,2618
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation and characterization of Salmonella and Escherichia coli-specific bacteriophages collected from Minnesota Wastewater Treatment Plant Cortes Ortega,E., Hansen,E.G., Farmer,M.L., Martinez-Villalobos,J.M. and Bowden,S.D. 2024-11-27 — GenBank