Protein

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Genbank accession
YP_010669571.1 [GenBank]
Protein name
baseplate wedge subunit
RBP type
TSP
Evidence RBPdetect2
Probability 0,62
Protein sequence
MPVGFNSPARNLFLLGSSGAQVVTNFFKTIDQSAGTDGVYLPDEIKYNSVDQKFVLAGSAEDNNSKGFGWFEKRDDAGTADFENRIESTQSGINTTLRAMELDSNDNLIVVGKTGDVPWIAKYSNGGVIDWQSTTNSGEVEYTGVTSDSNGQYYACGNTPTSGEAQAFVEKFDASGNPGWGKSAFMLGRDVVLNRIAANARGEVVAVGYLEDDVYNKGYIVKIDTNTGEVLWDRTLSPDWQGDMLNCSDVYIDSNDQIYVTVNGTFVGYLIKYTAEGNMIWQKTTDNPSTTITFDQVKSDGETEQTIVFGTYDDGTDVGGVLSKYSKDGSLVWRRTLFSSYNNSNTFSNVCLDADPSFYYLLYIDDAVSGLNGTPEAYTFGKVSSSGNGLGAFQYAEGTGETIDYEILNVVDEIGRLSDGSVRNDTSDLITYPFNANKLLFDDLATQVTNKKRQMDSADSFEYSGSPAIRPADFQELNLLGDNVSGRTWTDTSGKGNDGLVFVNEPFFGAGGAKFDGPTNGASTSISNLVVPSSSNFQFGTGDFTIEVWVYGSDWTGGSANQDQVIYYHNEELSGFYLQAGSLNYYNGSAGILISGSTLQDKRWYHLAAVRNSGTTTLYVDGVSVGSASDTDDYGVSAITIGKNSGNNLNQFNGYLSNFRIVKGTALYTSNFTPPTTQLTNISGTVLLTCQGYSSIVDNSSSANSITITSVTPTNDGPTHNAAGYWEFDAEGETITLSNVYALGTEDFTFEFWFRADSAGTGTWQYFFANKENFSGPFTRIGIHNTSNRLRFYTEQTDQTNVQGLGVATVLDDTWHHAMFVRSGTGCDIYLDGTLDNSVACMGGDIGNAVDDWIIGAQSSDGIGRFNGDLGEFRFYPRALTATQVFQNYNATKSKYIDEGPDTAPKIGPGIVYDSNLLLNYDFGNRATYDGNLYDRYINGPVGLVSTYNSVIGVGNDRGLGNSVDVGSGKIVGGETSDDDAAFNAGQITICDLDGSNVIRVGASDAAASQQFGSGVRIYNNNIYVSKSVSPNTTLYRYDMDGTNETTITLPSTAQLSGGLFDIDKDNGKIVCGDATFGSKIHVFNSDGTGNVDIPLPSDAEDPFIFDIGHGKVAVGDYGWSQVVASGPGQTSGGDYEGRVYVYDQDGTNEIILRAWDVDEALAKYPDYDTSNGYGGYGRHYTQFGTAVGIGKDIIVVGCNLDFDKGLWAGAIYIFDHNGRPIKKVIGSTVYGGDNISTYTGSYFGETIRVTEDRIYVNALLHNNLTPDGTTNGPGAVFVFDHQGNELGIMTPPTGTDFPNNSYYGGTLNEGIAVGENKVVVGSRYSHPIGGSGHGAINIYDLKHSLPTTVKNLSSSSYTGTINGATFNSDGYFEFDNDYIDAGYSIPTNNFTVETWFKKTDTAYWSPVWACEVWNQSSGYLLYFDGNNVLELTSGGNLTGLLQVNTTGNMTDWRHLVLTIDGSNVATIYQNGVSLGSTTITPVGSIQKPLRIGARFANDGNGSADGRQTQSGGLRAYNRALSATEVSQNFNATRSKYGV
Physico‐chemical
properties
protein length:1539 AA
molecular weight: 165782,93670 Da
isoelectric point:4,36912
aromaticity:0,11631
hydropathy:-0,33990

Domains

Domains [InterPro]
DC_0902
ATT
1–485
DC_0902 IPR013320 G3DSA:2.60.120.200 SSF69304 G3DSA:2.60.120.200
SSF101898
RBD
91–360
SSF101898 G3DSA:2.60.120.200 IPR013320 IPR013320
PF13385
LEC
536–663
PF13385 PF13385 PF13385
IPR006558
LEC
542–670
IPR006558 PTHR42535
DC_2085
STR
646–883
DC_2085
IPR006558
LEC
746–883
IPR006558
YP_010669571.1
1 1539
Architecture
ATT
STR
STR
STR
ATT 1-485 | STR 486-898 | STR 914-1101 | STR 1338-1532 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010669571.1
1 1539
Domain Start End Length (AA) Confidence
N-terminal 1 28 28 0,9703
Central domain 29 268 241 0,7720
C-terminal 269 1539 1270 0,1086
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-28
Central
29-268
C-terminal
269-1539

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage S-H9-1
[NCBI] 		2783674 Uroviricota > Caudoviricetes > Pantevenvirales > Scyllavirus > Scyllavirus aitchnine
Host Synechococcus sp. MW02
[NCBI] 		1620844 Cyanobacteriota > Cyanophyceae > Synechococcales > Synechococcaceae > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010669571.1 [NCBI]
Genbank nucleotide accession
NC_070961 [NCBI]
CDS location
range 69545 -> 74164
strand -
CDS
ATGCCAGTAGGATTTAATAGTCCCGCCAGAAACCTCTTCTTGTTAGGTTCATCTGGCGCACAAGTTGTAACAAACTTCTTCAAGACAATTGATCAGTCAGCGGGGACTGATGGTGTATATCTTCCAGATGAAATCAAATACAATAGTGTTGACCAGAAGTTTGTTCTTGCTGGATCTGCCGAAGACAACAACTCAAAAGGATTTGGTTGGTTTGAGAAGAGAGATGATGCTGGAACTGCTGACTTTGAGAACAGGATTGAGTCAACACAATCTGGTATCAATACAACTCTTCGTGCTATGGAGTTGGATAGCAACGACAATCTAATTGTTGTTGGTAAAACTGGTGATGTCCCTTGGATTGCTAAGTATTCTAATGGTGGTGTAATTGATTGGCAATCTACTACCAATAGTGGTGAAGTAGAATATACGGGCGTCACATCAGACAGCAACGGACAATACTATGCTTGTGGAAATACACCCACATCAGGAGAAGCACAAGCATTTGTAGAGAAGTTTGATGCTAGTGGTAATCCTGGATGGGGTAAGTCAGCATTCATGCTGGGCAGAGATGTTGTCCTCAATAGAATTGCTGCTAACGCTAGAGGAGAAGTAGTTGCTGTTGGATATCTTGAGGATGATGTTTACAACAAAGGATACATTGTCAAGATTGACACTAACACTGGTGAAGTTCTATGGGATAGAACACTAAGCCCAGACTGGCAAGGTGATATGCTAAATTGTAGCGATGTTTATATTGATAGCAACGATCAGATTTATGTTACTGTCAATGGAACATTCGTTGGTTATCTTATCAAATATACTGCCGAAGGTAATATGATTTGGCAGAAAACAACCGACAATCCTTCCACTACAATTACTTTTGATCAAGTAAAATCTGATGGTGAGACAGAGCAGACTATTGTATTTGGAACTTATGATGATGGAACTGATGTTGGTGGTGTATTGAGTAAGTATTCTAAGGATGGTAGTTTAGTCTGGAGAAGAACTCTCTTTAGTTCTTACAATAACTCAAATACATTTTCTAATGTGTGTTTAGATGCCGACCCATCATTCTACTATCTATTGTATATTGATGATGCTGTTAGCGGACTGAATGGAACACCAGAAGCATATACATTTGGTAAAGTCAGTAGCTCTGGTAATGGTCTTGGTGCTTTCCAATATGCAGAAGGAACTGGTGAGACTATTGATTACGAAATCCTAAACGTTGTTGATGAGATCGGTAGACTATCTGATGGTTCTGTAAGAAACGACACCAGCGATCTCATCACTTATCCATTCAACGCTAACAAACTACTCTTTGATGACCTTGCTACTCAGGTCACTAACAAGAAGAGACAGATGGATAGTGCTGATAGCTTTGAGTATAGTGGTAGTCCTGCTATTAGACCTGCTGACTTCCAAGAGTTGAACCTGTTGGGTGATAATGTTAGTGGTAGAACTTGGACTGATACTTCGGGCAAAGGTAATGATGGATTAGTATTTGTGAATGAACCATTCTTTGGTGCTGGCGGAGCGAAGTTCGATGGTCCTACTAATGGAGCATCCACATCAATTTCCAATTTAGTTGTACCATCTTCATCTAATTTTCAGTTTGGAACTGGAGACTTTACAATTGAAGTTTGGGTTTATGGTTCAGATTGGACTGGTGGATCAGCAAATCAAGATCAAGTAATTTATTATCATAACGAAGAGCTATCTGGATTTTATCTTCAAGCAGGATCTTTAAACTATTACAATGGTTCTGCTGGAATATTAATATCTGGTTCTACATTACAAGATAAAAGATGGTATCATTTAGCAGCAGTAAGAAATAGTGGAACAACTACATTATACGTAGATGGTGTCAGTGTGGGATCAGCAAGTGATACAGATGATTATGGAGTATCAGCAATTACTATCGGTAAAAATAGTGGCAACAATTTAAATCAATTTAATGGTTATCTATCTAATTTTAGAATTGTAAAAGGAACAGCACTCTACACATCAAACTTTACTCCACCAACTACACAACTAACTAATATTTCTGGCACAGTTCTTCTGACGTGCCAAGGTTATAGTAGTATTGTTGATAATAGCTCTAGTGCCAACTCAATAACTATAACATCTGTCACTCCAACTAATGACGGACCCACCCACAACGCCGCTGGATACTGGGAGTTTGATGCTGAAGGAGAAACGATTACATTATCAAATGTGTATGCTTTAGGAACAGAAGATTTCACATTTGAGTTTTGGTTTAGAGCTGACAGTGCTGGAACAGGAACGTGGCAGTATTTCTTTGCCAATAAAGAAAATTTCTCTGGACCATTTACCAGAATTGGTATCCACAATACATCAAATCGACTAAGATTTTACACAGAACAAACCGATCAAACAAACGTTCAAGGACTTGGTGTTGCTACTGTTCTTGATGATACTTGGCATCATGCTATGTTTGTAAGATCTGGCACAGGATGTGATATATACCTTGACGGAACACTTGATAATTCCGTGGCATGTATGGGTGGAGATATAGGTAATGCTGTTGATGATTGGATTATTGGAGCACAAAGTAGCGATGGAATTGGTAGATTTAATGGAGACCTTGGAGAGTTTCGTTTCTATCCAAGAGCACTAACAGCAACACAAGTATTCCAAAACTACAACGCTACCAAGAGTAAGTATATCGACGAAGGACCTGATACAGCACCTAAGATTGGTCCTGGTATTGTATATGATAGCAACTTGTTATTGAACTATGACTTTGGAAACAGAGCGACTTATGATGGTAACTTATATGATAGGTATATTAATGGTCCAGTTGGTTTGGTATCAACTTACAATTCTGTAATTGGAGTTGGTAATGATAGAGGACTGGGTAACTCTGTTGATGTTGGTAGTGGAAAGATTGTGGGAGGGGAAACTTCTGATGACGATGCAGCATTTAATGCAGGTCAGATTACTATTTGTGATCTTGATGGATCAAATGTTATTAGAGTTGGAGCAAGTGATGCAGCAGCTTCTCAGCAATTTGGAAGTGGAGTTAGAATTTACAATAATAATATTTACGTGAGTAAATCTGTATCTCCCAATACCACATTATATCGTTATGATATGGACGGAACAAATGAAACCACAATTACACTACCATCAACAGCACAATTGTCTGGTGGGTTGTTTGATATTGATAAAGATAATGGAAAAATAGTTTGTGGAGATGCTACTTTTGGATCTAAAATTCACGTCTTTAATTCAGATGGAACGGGTAATGTAGATATCCCACTTCCTTCCGATGCAGAGGACCCTTTTATTTTTGATATCGGACATGGTAAAGTAGCAGTTGGTGATTATGGATGGAGTCAAGTTGTTGCTAGTGGTCCTGGTCAAACTTCAGGTGGAGATTATGAAGGAAGGGTATATGTCTATGATCAAGATGGAACAAATGAAATTATACTTCGTGCTTGGGATGTAGATGAAGCTTTAGCTAAGTATCCAGACTATGATACTTCTAATGGTTATGGTGGATATGGAAGACACTATACTCAGTTTGGAACGGCAGTAGGAATTGGTAAAGATATTATTGTTGTTGGTTGCAATCTTGATTTTGATAAAGGGTTGTGGGCAGGAGCAATTTATATCTTCGATCATAATGGCAGACCTATTAAAAAAGTTATAGGATCTACAGTATATGGTGGAGATAACATCTCAACTTACACAGGTAGTTATTTTGGAGAAACTATAAGGGTAACTGAAGATAGAATTTATGTGAACGCCTTACTCCATAATAATTTAACTCCAGATGGCACTACTAATGGTCCTGGAGCAGTATTTGTTTTTGATCATCAAGGAAATGAACTTGGCATCATGACACCACCAACTGGAACAGATTTTCCAAACAATAGCTATTATGGTGGAACATTAAATGAAGGTATTGCTGTTGGTGAAAATAAAGTTGTTGTTGGATCTCGATATTCTCATCCTATTGGTGGAAGCGGACATGGTGCTATCAACATCTACGATCTAAAACATTCACTACCAACCACAGTAAAGAACCTCTCAAGTTCTTCTTATACTGGCACGATCAACGGAGCTACTTTCAATAGTGATGGATACTTTGAGTTTGATAATGATTACATAGATGCTGGATACTCAATCCCAACAAATAATTTTACAGTGGAAACTTGGTTCAAGAAAACTGATACAGCATATTGGTCTCCTGTTTGGGCATGTGAAGTATGGAATCAAAGTTCTGGATATCTATTATATTTTGATGGAAATAATGTTTTAGAACTAACCTCAGGTGGAAATCTTACTGGACTTCTTCAAGTAAATACCACAGGAAATATGACTGACTGGAGACATCTTGTTCTTACTATTGATGGATCTAACGTTGCTACAATTTATCAGAATGGAGTTTCGCTTGGTAGCACAACTATCACTCCCGTGGGATCTATACAGAAACCTCTTAGAATTGGAGCAAGATTTGCTAATGATGGTAATGGATCTGCTGATGGAAGACAAACACAATCAGGAGGACTTCGTGCTTACAACAGAGCACTAAGCGCCACAGAAGTATCCCAAAACTTCAACGCCACCCGTAGTAAGTACGGTGTCTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
5663caa6f4a5f3519eb56c568be36f2e10c02c205d4a53eeb6687b804485e7ed
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,7509
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Isolation and Genome Sequence of a Novel Cyanophage S-H9-1 from the Yellow Sea, China Jiang,T. 2019-04-04 — GenBank