Protein

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Genbank accession
QBX21187.1 [GenBank]
Protein name
capsid and scaffold protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MSIVTMTFNEHDFSDLIVIHDIRRDIGNETSLTLTDGPKIGAIVTDKTINPKYIEVDFSIWAEDRNTLKRKLAKYFETDSEAKLLFSDEPNVYYLARKTGKIPTREGRGYWSTGTVTFLIPDGVAHSTTYRRFDNPTVKPDRLAFRLKNDGTTDAFPIITVKHNSENGYLAAVNAKGATAIGNREEADTVSVKQSEMLLDFRDSKIGNALTYGTPNIGIMNDQNANPVFSGNIRKVNVWGRDHLELNGRGFSSLTWDIPNDSAGGVGSLNDYLWWRQIFWLGATNQYGAMKITVSDSNGQFLYGVETFKRSNGLDCEYNFMATDGKGGYNMIKQWRFTGTHWDYHNPFNEPRGWSDLKRNDDRVTVYWFGTYNEFYIPEIKGKKSKKIHIAFSSIGNHPIVSHMYLDSFYYRKDHVSVAKDIPNRYPIGSTVVIDCEDDTITVDGMDRFGDRIQGSSWLKIPPGESELEIYCSSWIRNKPTVSIQFEERYL
Physico‐chemical
properties
protein length:491 AA
molecular weight: 55953,03730 Da
isoelectric point:6,15995
aromaticity:0,12220
hydropathy:-0,53503

Domains

Domains [InterPro]
DC_0420
STR
1–491
DC_0420
G3DSA:2.40.30.200
ATT
2–126
G3DSA:2.40.30.200 IPR054738
IPR006520
Unmapped
6–126
IPR006520
IPR008841
STR
21–119
IPR008841
QBX21187.1
1 491
Architecture
ATT
STR
ATT 1-126 | STR 127-491
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QBX21187.1
1 491
Domain Start End Length (AA) Confidence
N-terminal 1 193 193 0,9758
Central domain 194 396 204 0,2646
C-terminal 397 491 94 0,4928
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-193
Central
194-396
C-terminal
397-491

Taxonomy

  Name Taxonomy ID Lineage
Phage Streptococcus phage Javan565
[NCBI] 		2548260 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Streptococcus suis
[NCBI] 		1307 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Lactobacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QBX21187.1 [NCBI]
Genbank nucleotide accession
MK448806 [NCBI]
CDS location
range 30702 -> 32177
strand +
CDS
ATGAGTATCGTAACAATGACATTTAATGAGCATGATTTTTCGGATTTGATTGTTATCCACGATATTCGTCGTGATATTGGAAATGAAACTTCATTGACTTTAACGGATGGACCAAAGATTGGAGCGATTGTTACTGATAAAACAATTAATCCAAAATATATTGAAGTGGATTTCTCTATATGGGCAGAGGATAGAAATACCTTGAAGCGTAAACTTGCAAAGTATTTTGAAACGGATTCAGAAGCGAAGTTATTGTTTTCTGATGAGCCAAATGTTTACTACTTGGCAAGAAAGACAGGGAAAATTCCCACTAGAGAGGGAAGGGGATATTGGTCGACTGGGACGGTGACATTTTTGATTCCTGATGGGGTCGCTCATTCGACAACGTATCGGCGATTTGATAATCCCACTGTAAAACCAGATCGTTTGGCATTCCGTTTAAAAAACGATGGAACTACGGATGCCTTTCCGATTATTACTGTAAAACACAATTCTGAGAATGGCTATCTTGCTGCAGTAAATGCTAAGGGTGCTACAGCTATTGGAAATAGAGAGGAAGCTGACACTGTATCTGTTAAGCAGTCTGAGATGCTACTGGACTTTAGAGATTCAAAAATTGGCAATGCTTTAACTTATGGCACTCCTAACATTGGAATCATGAATGACCAAAACGCAAATCCTGTATTCAGCGGCAATATTCGTAAGGTTAATGTTTGGGGGCGCGACCATCTTGAATTAAACGGTCGTGGTTTTAGTTCTCTTACCTGGGATATTCCAAACGATAGTGCTGGTGGCGTTGGGTCTCTCAATGATTACTTGTGGTGGAGACAAATTTTTTGGCTTGGTGCTACAAATCAGTACGGAGCTATGAAAATTACGGTATCGGATAGCAACGGTCAATTTTTATACGGTGTAGAAACATTTAAGAGAAGCAATGGGCTTGATTGTGAATATAATTTTATGGCTACCGATGGAAAAGGTGGTTACAACATGATTAAGCAATGGCGATTTACAGGCACTCATTGGGATTATCATAATCCTTTTAATGAACCTCGTGGCTGGTCTGATTTAAAGAGAAATGATGATAGGGTAACGGTCTATTGGTTTGGTACCTATAATGAGTTCTACATTCCTGAGATTAAAGGTAAAAAGTCTAAGAAAATCCATATTGCTTTCTCATCAATTGGGAACCATCCGATTGTATCACACATGTATCTGGATAGTTTCTACTACCGCAAGGATCATGTTAGCGTCGCTAAAGATATTCCAAATCGTTATCCAATTGGTTCTACGGTCGTTATTGATTGTGAGGATGACACTATAACTGTTGATGGCATGGATCGTTTTGGAGACCGCATTCAAGGGTCTTCGTGGTTGAAAATTCCGCCTGGAGAGAGTGAGTTAGAGATTTATTGTTCTAGCTGGATTAGGAATAAACCTACTGTGTCTATTCAATTTGAAGAGAGGTATCTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
34c4bbe6790ca97c4f1bc304e8f681412e21acbe23c32576c60e65f68e6ff89b
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,9079
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50