Protein

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Genbank accession
AFM54864.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence RBPdetect
Probability 0,85
Protein sequence
MSNTTIGREPIQIFEIEQPSCSNTYGVSPCAAAGTSKCFNTRATCQDTPNYNHDASIFWRFTHASSNVVIDTYEQDGAITKTPAIPSLVSVSTVPTKINAGGASDDLSVLGRRASVKITLGDHQHDDSFADKYVDERPYNAFDSGTFWGKWIRRNPYYSAMKCRVYEGYVGETLDQMITKTYVVDAIDGANSQGKVSITAKDPLSLADDKRAIMPQTSDLELFAAINQSKTTGIILTGAELDLSQEMGNTGANKYIRIDDEIILYTGYTVSTEQYTLTGVVRGQLGTTGASHSADESAQRVIHYDTMYSWLIAKDAILNYSTVPSAYIDASAWDVEGNLWLTPFQFTGTIAEPTPVVDILEELTRDSMFYIWWDERTQLIEMRALSPVSGDTPAINNESNILKDSFSLSAKPDERVSRVIIYYNQKNPTANDDEISNYSNVRITVDGEAESEFLFNEVRSSSIFSRWMVSESQALQIGTRRLAAFAETPEYMRITMDAKDRSLWTADVVSVTVPQIQDEFGQAESGLWQIIAVEEIQYGDKIRYDLRRFTFQINRPAYWTADDQVTYDLASDTDKDDLNAWWSDGNGLMLNGDDAYRWS
Physico‐chemical
properties
protein length:599 AA
molecular weight: 66992,48420 Da
isoelectric point:4,50173
aromaticity:0,10351
hydropathy:-0,38698

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AFM54864.1
1 599
Domain Start End Length (AA) Confidence
N-terminal 1 223 223 0,7262
Central domain 224 422 200 0,1613
C-terminal 423 599 176 0,0926
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-223
Central
224-422
C-terminal
423-599

Taxonomy

  Name Taxonomy ID Lineage
Phage Marinomonas phage P12026
[NCBI] 		1176423 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Marinomonas
[NCBI] 		28253 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Oceanospirillales
Host Marinomonas sp.
[NCBI] 		1904862 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Oceanospirillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AFM54864.1 [NCBI]
Genbank nucleotide accession
JQ867100 [NCBI]
CDS location
range 11954 -> 13753
strand +
CDS
TTGAGTAACACAACGATAGGCCGCGAGCCGATACAGATCTTTGAAATCGAACAGCCATCTTGTAGTAACACTTACGGAGTTTCACCATGCGCAGCGGCTGGCACATCCAAATGTTTTAATACCCGCGCAACATGCCAAGACACGCCGAACTACAACCATGACGCATCAATATTTTGGCGCTTCACTCATGCGTCATCGAATGTCGTTATCGATACATACGAGCAAGACGGGGCTATAACGAAAACGCCTGCAATTCCTTCCCTTGTCTCTGTTTCCACGGTTCCAACCAAAATAAACGCTGGCGGCGCGTCCGATGATCTCAGTGTTTTAGGGCGTAGAGCGTCCGTTAAAATAACGCTTGGCGATCATCAGCACGATGATTCTTTTGCAGACAAATACGTTGACGAGCGCCCGTACAATGCGTTTGATTCTGGCACGTTCTGGGGTAAGTGGATCAGACGAAACCCGTACTACTCTGCAATGAAGTGCCGAGTGTACGAGGGGTATGTGGGCGAAACACTAGATCAGATGATCACCAAGACCTATGTAGTTGACGCTATCGATGGCGCAAACAGTCAGGGCAAGGTCTCAATAACCGCGAAAGATCCGCTAAGTTTGGCAGACGACAAACGCGCAATCATGCCGCAGACAAGCGATCTCGAATTGTTCGCAGCAATCAATCAATCCAAAACCACTGGCATTATATTGACGGGCGCAGAGTTGGATTTGTCGCAAGAAATGGGCAACACTGGCGCGAACAAATACATTCGCATTGATGACGAAATCATTCTTTATACTGGCTACACGGTATCAACAGAACAATACACATTGACGGGAGTGGTTCGCGGCCAGCTTGGTACCACAGGCGCAAGCCACAGCGCAGACGAATCGGCACAGCGTGTTATTCACTATGACACCATGTATTCTTGGTTAATTGCTAAAGACGCAATACTGAATTATTCAACAGTGCCTAGCGCGTACATAGACGCATCAGCATGGGACGTAGAGGGTAATTTGTGGTTAACGCCTTTTCAATTCACAGGAACTATTGCTGAACCCACGCCAGTTGTTGATATTCTCGAAGAGCTTACGCGCGATTCAATGTTTTATATTTGGTGGGACGAGCGAACGCAGCTTATCGAAATGAGGGCCCTAAGCCCAGTGAGCGGAGACACCCCCGCAATCAACAACGAATCAAACATATTAAAAGACTCATTTTCTCTGTCTGCAAAACCAGACGAGCGAGTGAGTCGAGTCATCATTTACTATAATCAGAAAAACCCAACGGCAAACGATGACGAAATTTCGAACTATTCAAACGTTCGCATCACTGTGGATGGTGAAGCGGAAAGCGAGTTCCTATTTAACGAAGTTCGATCATCATCTATATTTAGCCGATGGATGGTGTCAGAATCGCAAGCCTTGCAAATCGGTACGCGCCGCCTAGCCGCATTCGCTGAAACGCCAGAATACATGCGCATTACGATGGACGCAAAAGACCGATCATTGTGGACGGCTGACGTGGTGAGCGTAACAGTGCCGCAGATACAGGACGAATTTGGTCAGGCCGAGAGCGGCTTGTGGCAGATTATCGCAGTGGAAGAAATACAATACGGCGATAAAATACGCTATGATTTAAGACGATTTACATTCCAGATCAACCGCCCAGCATACTGGACGGCTGACGATCAGGTTACATATGATCTCGCGAGCGACACAGACAAAGACGATTTGAATGCGTGGTGGTCTGATGGTAATGGTTTAATGCTTAACGGCGATGATGCTTACAGGTGGAGTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
21181b575dd27ce505e141fac0d1550add0d14fbfed84a4150e3bf1d4e614911
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8108
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of marinomonas bacteriophage p12026 Kang,I., Jang,H., Oh,H.M. and Cho,J.C. 2012 22843865 GenBank