Protein

View in Explore
Genbank accession
YP_009204272.1 [GenBank]
Protein name
tail protein with endopeptidase domain
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,80
Protein sequence
MDYHDHLSVMDFNELICENLLDVDYGSFKEYYELNEARYITFTVYRTTHNSFVFDLLICENFIIYHGEKYTIKQTAPKVEGEKVFIEVTAYHIMYEFQNHSIESNKLDDDSSESSKTPEYTLEEYLRYGFANQKTSVKMTYKIIGDFKRKVPIDELGNKNGLEYCKEAVDLFGCIIYPNDTEIGFYSPETFYQRSEKVIRYQYNTDTVSATVSTLELRTAIKVFGKKYTAEEKKNYNPIRTTDIKYSNGFIKEGTYRTETIGSKATINFDCKYGNETVRFTIKKGSQGGIYKLILDGKQIKQISCFAKSVQSETIDLIKNIDKGKHVLEMIFLGEDPKNRIDISSNKKAKPCMYVGTEKSTVLNLIADNSGRNQYKAIVDYVADSAKQFGIRYANTQTNEDIETQDKLLEFAKKQINDTPKTELDVNYIGYEKIEPRDSVFFVHELMGYNTELKVVKLDRSHPFVNAIDEVSFSNEIKDMVQIQQALNRRVIAQDNRYNYQANRINHLYTSTLNSPFETMDIGSVLI
Physico‐chemical
properties
protein length:527 AA
molecular weight: 61003,13650 Da
isoelectric point:5,66255
aromaticity:0,11765
hydropathy:-0,54554

Domains

Domains [InterPro]
G3DSA:6.20.110.10
ATT
4–90
G3DSA:6.20.110.10 G3DSA:3.55.50.40 DC_1309 DC_0297
IPR044051
ENZ
18–92
IPR044051 IPR010572
YP_009204272.1
1 527
Architecture
ATT
STR
ENZ
RBD
ATT 4-90 | STR 91-377 | ENZ 378-486 | RBD 495-527
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009204272.1
1 527
Domain Start End Length (AA) Confidence
N-terminal 1 231 231 0,7872
Central domain 232 435 205 0,4969
C-terminal 436 527 91 0,0034
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-231
Central
232-435
C-terminal
436-527

Taxonomy

  Name Taxonomy ID Lineage
Phage Staphylococcus phage vB_SauS_phi2
[NCBI] 		1674930 Uroviricota > Caudoviricetes > Triavirus >
Host Staphylococcus aureus
[NCBI] 		1280 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Bacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009204272.1 [NCBI]
Genbank nucleotide accession
NC_028862 [NCBI]
CDS location
range 15571 -> 17154
strand +
CDS
ATGGATTATCATGATCATTTATCAGTAATGGATTTTAATGAATTGATTTGTGAAAATTTACTAGATGTAGATTACGGTTCTTTTAAAGAATATTATGAACTGAATGAAGCTAGGTACATCACTTTTACAGTTTATAGAACTACTCATAATAGTTTTGTTTTCGATTTACTAATTTGTGAAAATTTCATTATTTATCATGGTGAAAAATACACAATCAAGCAGACAGCACCGAAGGTTGAGGGAGAAAAAGTTTTTATTGAAGTTACGGCATATCATATTATGTATGAATTTCAAAATCACTCTATTGAATCAAATAAGCTTGATGACGACAGTAGCGAATCTTCAAAAACGCCAGAATACACGTTAGAAGAGTATTTGAGATACGGATTTGCAAATCAAAAAACTTCGGTCAAAATGACCTATAAAATAATTGGAGATTTTAAGCGAAAAGTACCGATTGACGAATTAGGTAACAAAAACGGCTTAGAATACTGTAAAGAAGCGGTAGACCTGTTTGGCTGTATAATTTACCCAAATGATACAGAGATTGGTTTTTATTCTCCTGAAACATTTTATCAAAGAAGCGAGAAAGTGATTCGATATCAATATAATACTGATACTGTATCTGCAACTGTCAGTACATTGGAATTAAGAACAGCTATAAAAGTTTTTGGAAAAAAGTATACAGCTGAGGAAAAGAAAAATTATAATCCTATTAGAACAACTGACATTAAATATTCAAATGGTTTTATAAAAGAAGGTACTTATCGTACCGAAACAATTGGGTCTAAAGCTACTATTAACTTTGATTGCAAGTATGGTAATGAAACAGTTAGATTTACAATAAAAAAGGGCTCTCAAGGTGGAATATATAAGTTGATTTTAGACGGCAAGCAAATTAAGCAAATTTCTTGTTTTGCTAAGTCGGTTCAGTCTGAAACAATAGATTTAATAAAAAATATTGATAAAGGCAAGCACGTTTTAGAAATGATATTTTTAGGAGAAGACCCCAAAAATAGAATTGATATATCTTCAAATAAAAAAGCTAAGCCTTGTATGTATGTTGGAACTGAAAAATCAACAGTCTTAAATTTAATTGCTGATAATTCAGGTCGCAATCAATACAAAGCAATTGTCGACTACGTCGCAGATAGTGCAAAGCAGTTTGGGATTCGATATGCTAATACGCAAACAAATGAAGATATCGAAACACAGGATAAGCTGTTAGAATTTGCAAAAAAGCAAATAAATGATACTCCTAAGACTGAATTAGATGTTAATTATATAGGTTATGAAAAAATAGAACCAAGAGATAGCGTATTTTTTGTTCATGAATTAATGGGATATAACACTGAATTAAAGGTTGTTAAACTTGATAGGTCACATCCATTTGTAAACGCAATAGATGAAGTGTCTTTCAGCAATGAAATAAAAGATATGGTACAAATTCAACAAGCACTTAACAGACGAGTTATTGCACAAGATAATAGATATAACTATCAAGCAAATCGTATAAATCATTTATACACTAGTACTTTGAATTCTCCTTTCGAGACAATGGATATAGGGAGTGTATTAATATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
0fd2b1e50ddbb99e6fa648bd8cea7547b88ace1b6ae1d27df8092c469871c431
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8915
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Efficacy of two Staphylococcus aureus phage cocktails in cheese production El Haddad,L., Roy,J.-P., Khalil,G.E., St-Gelais,D., Champagne,C.P., Labrie,S. and Moineau,S. 2016-01 — GenBank