Protein

View in Explore
Genbank accession
WPK34110.1 [GenBank]
Protein name
short tail fiber protein
RBP type
TF
Evidence RBPdetect
Probability 0,89
TF
Evidence Phold
Probability 1,00
Protein sequence
MSNNNTYQHVSNESIYVEFDPTGSNFPDTVTNVQAALAAISPSGVNGVPEATTTTPGIIQIATPQEVIDGLDNSKAVTPASLNARLQYPNATETQYGLTRYATEDEAVAGAIDDASITPLKLNQKIDNVFQTKVSTEATNGVIKISTSAAALAGSDDTTAMTPLKTQQLAIKLISQIAPNNSDATESITGVVRLATVAQAQQGTLREGYAISPYTFMNSVASETNKGVVKLGTQTEVNSNNSSVVVTGATLNGRGATTSLRGVVRLTTQAGSQSGGDGSSALAWNADVIHQRGGQTINGTLRINNTLTVGSGGANITGNVNMTGGYIQGNRIVTQNELDRILPVGAITMWAADSLPSSDWRFCHGGTVSASECPVYASRIGTRYGGSSSNPGLPDMRGLFVRGSGRGNHLTNPNVNGNDQFGKPRLAVGCTGGYVGEVQKQQMSYHKHAGGFGEHDDAGAFGNTRRSNFVGTRKGLDWDNRSYFTNDGYEIDPASQRNSKYTLNRPELIGNETRPWNISLNYIIKVK
Physico‐chemical
properties
protein length:527 AA
molecular weight: 55678,85930 Da
isoelectric point:6,40708
aromaticity:0,06072
hydropathy:-0,39127

Domains

Domains [InterPro]
IPR015173
247–327
IPR015173 IPR037053 IPR044916
SSF69349
247–327
SSF69349 SSF88874
G3DSA:2.10.280.10
247–287
G3DSA:2.10.280.10 G3DSA:2.160.30.10 IPR011083 IPR027448
WPK34110.1
1 527
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage AV110
[NCBI] 		3077255 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WPK34110.1 [NCBI]
Genbank nucleotide accession
OR352940.1 [NCBI]
CDS location
range 164368 -> 165951
strand +
CDS
ATGAGTAATAACAATACATACCAACACGTTTCAAATGAATCTATTTACGTTGAATTCGACCCTACTGGGTCGAATTTTCCAGATACAGTCACTAATGTCCAAGCCGCATTAGCTGCTATTTCTCCTTCAGGTGTTAATGGCGTACCGGAAGCAACAACTACTACACCTGGAATTATTCAAATAGCCACTCCACAAGAAGTTATTGATGGATTAGATAATAGTAAAGCTGTTACTCCGGCATCACTGAATGCTCGTCTACAATATCCTAATGCAACCGAAACTCAATATGGTTTAACTCGTTATGCTACTGAAGATGAAGCAGTAGCCGGAGCTATTGACGATGCATCAATTACTCCGCTTAAATTGAATCAAAAAATAGACAATGTATTCCAGACAAAAGTATCAACAGAAGCAACAAATGGTGTAATTAAAATTTCAACTTCTGCTGCGGCATTAGCTGGTTCTGACGATACAACGGCAATGACACCGTTAAAAACACAACAATTAGCAATTAAACTTATTTCACAAATTGCTCCAAATAATAGTGACGCCACCGAATCTATTACAGGTGTTGTTCGTTTAGCTACAGTTGCACAAGCACAACAAGGCACCCTGCGTGAAGGCTATGCAATTTCACCTTATACCTTTATGAATTCAGTAGCATCAGAAACTAATAAAGGTGTCGTTAAACTAGGGACACAGACTGAAGTAAATAGTAACAACTCTTCAGTTGTAGTGACCGGCGCAACATTAAACGGGCGCGGGGCTACAACTTCTTTACGTGGAGTTGTTCGTTTAACTACACAAGCGGGTAGCCAATCAGGTGGTGATGGTTCTTCTGCCCTTGCTTGGAATGCTGATGTTATCCACCAACGAGGCGGTCAAACTATTAATGGCACGCTTCGCATTAATAATACGTTGACGGTTGGTTCTGGTGGTGCTAATATAACGGGTAATGTCAATATGACCGGTGGTTATATTCAAGGCAATCGTATTGTGACTCAAAATGAATTAGACCGAATTCTTCCAGTTGGCGCTATTACAATGTGGGCTGCAGATAGTTTGCCGAGTTCGGACTGGCGTTTCTGTCACGGTGGGACCGTTTCTGCTTCAGAATGTCCTGTATATGCTTCCAGAATTGGGACACGATATGGTGGTAGTTCTTCTAACCCAGGCTTGCCCGATATGCGTGGATTATTTGTTCGCGGCTCAGGTCGTGGTAACCATTTAACTAACCCTAATGTTAATGGTAATGACCAATTCGGTAAGCCTCGTCTGGCGGTAGGTTGTACCGGTGGATATGTTGGTGAGGTGCAAAAACAACAGATGTCATATCATAAGCATGCTGGCGGTTTTGGTGAACATGACGATGCAGGAGCATTCGGTAATACTCGTCGTTCAAACTTTGTTGGTACTCGTAAAGGACTTGACTGGGATAACCGTTCGTATTTTACTAACGATGGATATGAAATTGATCCAGCGTCTCAGCGTAACTCTAAATATACCCTGAATCGTCCAGAATTAATTGGAAATGAAACTCGCCCATGGAATATTTCTTTAAACTATATCATTAAGGTAAAATAA

Tertiary structure

PDB ID
5d8df2645b3e8c9b6c92ca38fe92c1d30209fdd9cd3c282e1fd536e38f1f3a58
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7008
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A collection of diverse bacteriophages for biocontrol of ESBL- and AmpC-beta-lactamase-producing E. coli Vitt,A.R., Sorensen,A.N., Bojer,M.S., Bortolaia,V., Sorensen,M.C.H. and Brondsted,L. 2023 — GenBank