Protein

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Genbank accession
YP_009275999.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,51
Protein sequence
MSIVIRRKNGDVLWFDAITEYGLTYQSSVTKHPVATGGYVSDHTTNENLIININAVLTDADFNINRPQNLGKLSTFDSGSVSVDDRGLYKPVNKQYTTNSGSITPVKIESIGSINRLLPEVIAQFTKDSIPVATVTPQSRAKTARAVKRELISMRNNREEFQVLELLDDFVIESYGPCIFTNLSFKEDSTTGEGVYPSMTIEEVTFTNLEEISVKVKTSNKGRKSGAAKDKLLETPPDNAPRTYTKMSSSAAAS
Physico‐chemical
properties
protein length:254 AA
molecular weight: 27940,11740 Da
isoelectric point:6,19542
aromaticity:0,07087
hydropathy:-0,37283

Domains

Domains [InterPro]
IPR048494
ATT
15–214
IPR048494
DC_1100
STR
26–254
DC_1100
YP_009275999.1
1 254
Architecture
ATT
STR
ATT 15-214 | STR 215-254
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009275999.1
1 254
Domain Start End Length (AA) Confidence
N-terminal 1 62 62 0,7072
Central domain 63 243 182 0,3579
C-terminal 244 254 10 0,9927
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-62
Central
63-243
C-terminal
244-254

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage vB_PsyM_KIL1
[NCBI] 		1777065 Uroviricota > Caudoviricetes > Vandenendeviridae > Flaumdravirus > Flaumdravirus KIL4
Host Pseudomonas syringae pv. porri
[NCBI] 		83964 Pseudomonadota > Gammaproteobacteria > Pseudomonadales > Pseudomonadaceae > Pseudomonas > Pseudomonas coronafaciens

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009275999.1 [NCBI]
Genbank nucleotide accession
NC_030934.1 [NCBI]
CDS location
range 36970 -> 37734
strand +
CDS
ATGTCCATTGTAATTAGAAGAAAAAACGGGGACGTGTTGTGGTTTGACGCAATCACTGAGTATGGCTTGACCTACCAGTCAAGCGTAACCAAACACCCTGTCGCCACAGGTGGTTACGTATCAGACCACACCACAAATGAAAACCTCATCATAAACATCAATGCTGTGCTCACTGACGCCGACTTCAATATAAATCGACCTCAGAATCTAGGGAAACTCTCCACATTTGATTCGGGTAGCGTTAGTGTTGATGATAGAGGCTTATATAAACCTGTTAATAAGCAATACACCACAAACAGTGGCAGTATCACTCCTGTAAAAATTGAATCTATAGGCAGCATAAACAGATTGCTGCCTGAGGTTATCGCACAGTTTACAAAGGACAGTATACCCGTAGCCACTGTCACTCCCCAGAGTAGGGCTAAAACAGCTAGAGCTGTTAAGCGTGAGTTGATCAGTATGAGAAACAACAGAGAGGAGTTTCAAGTATTAGAACTCCTTGATGATTTTGTTATTGAGAGCTACGGCCCTTGCATATTTACAAACTTATCCTTTAAAGAGGACTCTACAACTGGGGAAGGTGTTTACCCAAGTATGACTATAGAGGAAGTTACTTTCACTAATTTGGAAGAAATCAGTGTGAAAGTAAAGACTTCTAATAAAGGTAGAAAGTCTGGTGCTGCGAAAGATAAGCTGTTAGAAACACCACCTGACAACGCACCAAGAACTTACACTAAAATGTCTAGCAGCGCTGCTGCCTCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
8cceffc50d894ed1a5508422e83e4ab38a0798e4c6c709a492312f324dabb5d8
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7261
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50