Phage RBP Database

Genbank accession

YP_009275999.1 [GenBank]

Protein name

tail fiber protein

RBP type

TF

Evidence GenBank

Probability 1,00

TF

Evidence Phold

Probability 1,00

TSP

Evidence RBPdetect

Probability 0,51

Seq2Symm

C6 confidence 0,064

C6	0,064
C1	0,004
C10-C17	0,004

Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).

Protein sequence

MSIVIRRKNGDVLWFDAITEYGLTYQSSVTKHPVATGGYVSDHTTNENLIININAVLTDADFNINRPQNLGKLSTFDSGSVSVDDRGLYKPVNKQYTTNSGSITPVKIESIGSINRLLPEVIAQFTKDSIPVATVTPQSRAKTARAVKRELISMRNNREEFQVLELLDDFVIESYGPCIFTNLSFKEDSTTGEGVYPSMTIEEVTFTNLEEISVKVKTSNKGRKSGAAKDKLLETPPDNAPRTYTKMSSSAAAS

Physico‐chemical properties

protein length:	254 AA
molecular weight:	27940,11740 Da
isoelectric point:	6,19542
aromaticity:	0,07087
hydropathy:	-0,37283

Domain architecture

YP_009275999.1

1 254 aa

ATT 15–214 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR048494
ATT

IPR048494

YP_009275999.1

1254 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_1100
STR

DC_1100

YP_009275999.1

1254 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR048494	ATT	DC_0432	15	214	InterPro cluster	Dit-like phage tail protein, N-terminal domain	Central	Medium	Text match	416 proteins / 416 hits

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

YP_009275999.1

1 254 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	62	62	0,7072
Central domain	63	243	182	0,3579
C-terminal	244	254	10	0,9927

Note: Constraints were applied during segmentation.
Fixed 15 C-terminal predictions appearing before Central domain|C-terminal too short, adjusted boundary

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Pseudomonas phage vB_PsyM_KIL1 [NCBI] · taxon 1777065

Uroviricota Caudoviricetes Vandenendeviridae Flaumdravirus Flaumdravirus KIL4

Host

Pseudomonas syringae pv. porri [NCBI] · taxon 83964

Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas coronafaciens

Genbank protein accession

YP_009275999.1 [NCBI]

Genbank nucleotide accession

NC_030934.1 [NCBI]

CDS location

range 36970 -> 37734
strand +

CDS

ATGTCCATTGTAATTAGAAGAAAAAACGGGGACGTGTTGTGGTTTGACGCAATCACTGAGTATGGCTTGACCTACCAGTCAAGCGTAACCAAACACCCTGTCGCCACAGGTGGTTACGTATCAGACCACACCACAAATGAAAACCTCATCATAAACATCAATGCTGTGCTCACTGACGCCGACTTCAATATAAATCGACCTCAGAATCTAGGGAAACTCTCCACATTTGATTCGGGTAGCGTTAGTGTTGATGATAGAGGCTTATATAAACCTGTTAATAAGCAATACACCACAAACAGTGGCAGTATCACTCCTGTAAAAATTGAATCTATAGGCAGCATAAACAGATTGCTGCCTGAGGTTATCGCACAGTTTACAAAGGACAGTATACCCGTAGCCACTGTCACTCCCCAGAGTAGGGCTAAAACAGCTAGAGCTGTTAAGCGTGAGTTGATCAGTATGAGAAACAACAGAGAGGAGTTTCAAGTATTAGAACTCCTTGATGATTTTGTTATTGAGAGCTACGGCCCTTGCATATTTACAAACTTATCCTTTAAAGAGGACTCTACAACTGGGGAAGGTGTTTACCCAAGTATGACTATAGAGGAAGTTACTTTCACTAATTTGGAAGAAATCAGTGTGAAAGTAAAGACTTCTAATAAAGGTAGAAAGTCTGGTGCTGCGAAAGATAAGCTGTTAGAAACACCACCTGACAACGCACCAAGAACTTACACTAAAATGTCTAGCAGCGCTGCTGCCTCATAA

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)